LOC110487151 (LOC105012845)


Basic Information

Item Value
gene id LOC110487151
gene name LOC105012845
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62937168 ~ 62957406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559074.2
TGCACTGGTATGTGACGTCAGCGGCTCGTTGGATTGAGGTCCTGTGTCCTGCTGATTTTAATCCTGGCTGATTAGGTAACAGAGAGCAAGCGCCTGTGCAAACCctctgggggaagagagagaggaagtcaaGCATTTAGACAGAAGGAGGTTGTTAAAGCAGGGAAATTTTGCgcctggagagaagagaaaggggaacacttccccctctaccctccccctcGTTCATCCTAGCTTTCCACTCCAgacctctgcgtgtgtgtgtgtgtgtctatggacAACGGATCGACGATGCCCACGAACGGAATTAACAAAGCCTTGAAGCTGCAGTTTGGCCTCATCAACCACGAGAGCCGTTACCTAACGGCCGAGGCCTTCGGCTTCAAGGTGAACGCCTCGGCCTCCAGCATGAAGAAGAAGCAGATCTGGACTCTGGAGCAAGAGGACCAGGACACCCAGGTAGTGTTCCTTCGCAGCCATCTGGGCCGCTACCTGGCCTCCGACAAGGATGGTAAGGTGAGCTGCGGGGCAGAGCAGCCCGACTCGCCTGGCTGCCGCTTCCTGATCGTGGCCCAGTCGGACGGCCGCTGGGCGCTGCAGTCGGAGACATACCTGCGCTTCTTCGGAGGCTCGGCTGACTACCTGTCCTGCTTCGCCCAGGCCATCGGGGAGCCCGAGCTGTGGGCCGTCCACCTGGCCCTCCATCCGCAATCTAGCCTGCTCAGTGTTGCGCGCAAACGCTACGCCCACCTGTTTGCCAGGGAAGGAGAGATCTCGGTGGACAGCAACATCCCCTGGGGCTCGGACTCCCTGGTCACCCTGGTATACCTGGAAGGAAAGTACTTCCTGAAGACGTGTGACAGCCGCTTCCTCAGCAACGACGGGAAGCTGGTCAAAGAGAACACCCCCACCACCAGCTTCACCCTGGAGCTCAAGTCAGGCAAGCTGGCCTTCAAGGACTGCGATGGGAAGTACCTGACACCCATGGGCCCGACCGGCACGCTGCGCTCAGGCAGGTGCTCCAAGCCTGGCAAGGATGAGCTGTTTGATCTAGAGGAGAGCCACCCACAAGTCATTTTCCAGGCAGCCAACAAAAGATTTGTCTCCGTCAAACAAGGTGTGAGCATCTCAGCCAACCAGGATGtggagacagacatggagaccTTCCAGATGGAGATTGATAAGGAGAGCAAGAAGTGCATGTTTAGGACCAACGGCGGTAACTACTGGACACTGGTCTCCCACGGAGGGATCCAGTCCACAGCCACGGAGGTGGAGGCCAACACAATGTTTGACATTGAATGGCTCGGTCGCAGTGTAGCACTGAAGGCAAGCAATGGGAAGTACGTGTGCACCAAAAAGAATGGGCAGCTTTCAGCCGTCAGCGATTCCGTAGGTGATGATGAGCTCTTCCTGATGAAGCTCATTAATCGGCCCATGTTGATCCTGCGAGGGGAGAACGGTTTTGTGTGTCATCACAAGAGCTCCAACACGCTGGATGCCAACCGATCCGTCTATGACATCTTCTTACTGCTTTTCAGCGATGGCGCCTACCACATAAAaaGCGTAGGTGGAAAGTTCTGGTATGTCTCCCGCAGCGGCCTGGTGTGCTCAGACGGAGACAAGCCTGAGGACTTCTTCCTGGAGTTCCTGGAGCACGGGCGGGTGGGCATCAAGGGCAAGAACGGCAAGTACCTGCGTGGGGACAGCGGCACGCTGAAGGGCGACGCTGCTACCGtggacccctcctgtctctgggAGTACTAACCTGGCGCGACCTCCTAACGACCCCTGAAGCccgtggaggggtggagggagaaggagagagggaggacctgGTTCCCACCTGGGTTCACAGCTCAACCAACAACGATACATTACACAGACTGACTGGGGAACATTTTCACTACTCTCTTTTCTACTTTAGCGGCAAAGGAGAGGCCGTTCCCacttctttgttttgttttggcaAAGAGTGAAAATGTGTAGAAAGTTTCtttgtgtttattttattatatttgatttgttttccaaaaaaaacattggttACCTAAATATAGTTTTTTTCCAAGTGACATTGCCAACATCAACAACAGCGAATACTTAATAAAATCTGCTAATTTTGGTCACTCACACAGCCTATAAAAAAACATCAGATTCTGTATAGCGGTCCTTAAATTATTATCTGGATGCCTGAATAAAGGCAGCTTTTCACATCAATATGTCTTTGTTGTGATGTTTACTGTTGTCTTTAACAACAGTGTATCAGTACAATGATTATCCAACACTGCTCCCAAACATACTCACTGCTTCCAAAGAGGACACGAATCAGCTTCCAAAATGCCCAAATTAATGGTGTAGAATACCAGACCAGAGTAGCCCAAATGGCCCTGTTTGAGTTGCCCAAATGGCCCTGTTTGAGTAGCCAGAGTAGCCCAAATGGCCCTGTTTGAGTAGCCCAAATGGCCCTGTTTGAGTAGCCAAGAGTAGCCCAAATGGCCCTGTTTGAGTAGCCCAAATGGCCCTGTTTGAGTAGCCCAAATGGCCCTGTTTGAGTAGCCCAAATGGCCCTGTTTGAGTAGCCCAGAGTAGCCCAAATGGCCCTGTTTGAGTAGCCCAGAGTAGCCCAAATGGCCCTGTTTGAGTAGCCCAGAGTAGCCCAAATGGCCCTGTTTGAGTAGCCCAGAGTAGCCCAAATGGCCCTGTTTGAGTAGCCCAGAGTAACCCAAATGGCCCTGTTTGAGTAGCCCAGAG

Function

NR:

description
fascin-2-like

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K17455 FSCN2; fascin2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559074.2 True 2754 mRNA 0.53 5 62937168 62957406
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118938348 LOC106606427 coding downstream 10249 62899607 ~ 62926919 (-)
LOC110487064 lg3bp coding downstream 424739 62506293 ~ 62512429 (-)
LOC118938345 LOC106595712 coding downstream 437978 62495039 ~ 62499190 (-)
LOC118938346 LOC106606432 coding downstream 462744 62469918 ~ 62474424 (-)
LOC118936370 LOC106595712 coding downstream 477173 62455727 ~ 62459995 (-)
LOC110486089 LOC106606381 coding upstream 75006 63032412 ~ 63218815 (-)
LOC110517310 LOC106601910 coding upstream 349775 63307181 ~ 63309144 (-)
LOC110487088 otop2 coding upstream 399079 63356485 ~ 63361782 (-)
LOC110487424 otop2 coding upstream 412286 63369692 ~ 63399197 (-)
LOC110485274 LOC106606392 coding upstream 461943 63419349 ~ 63421498 (-)
G1194686 NA non-coding downstream 3608 62933343 ~ 62933560 (-)
G1194671 NA non-coding downstream 5880 62929952 ~ 62931288 (-)
G1194660 NA non-coding downstream 35404 62901363 ~ 62901764 (-)
G1194621 NA non-coding downstream 54461 62882495 ~ 62882707 (-)
G1194620 NA non-coding downstream 56819 62879730 ~ 62880349 (-)
G1194692 NA non-coding upstream 2945 62960351 ~ 62960595 (-)
G1194875 LOC101476622 non-coding upstream 8443 62965849 ~ 62978839 (-)
G1194895 NA non-coding upstream 36391 62993797 ~ 62994199 (-)
G1194897 NA non-coding upstream 46820 63004226 ~ 63005557 (-)
G1194898 NA non-coding upstream 48253 63005659 ~ 63005963 (-)
G1194684 NA other downstream 95 62935786 ~ 62937073 (-)
G1194521 NA other downstream 201458 62730954 ~ 62735710 (-)
G1194306 LOC106600182 other downstream 477270 62455904 ~ 62499352 (-)
G1194933 NA other upstream 179634 63137040 ~ 63137722 (-)
LOC110485277 LOC106602060 other upstream 539692 63495359 ~ 63509387 (-)
G1195624 NA other upstream 987670 63945076 ~ 63945764 (-)
LOC110487482 LOC106606373 other upstream 1377287 64334669 ~ 64362841 (-)

Expression

LOC110487151(LOC105012845) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110487151(LOC105012845) Expression in each Bioproject

Bar chart with 11 bars.
LOC110487151(LOC105012845) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 700.
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Co-expression Network