LOC110517310 (LOC106601910)


Basic Information

Item Value
gene id LOC110517310
gene name LOC106601910
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63307181 ~ 63309144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941864.1
GCGACACCATGTGGTATCTCCTGTCAACGTTCTGTCTGTACTGCGCAGTCGCGGTGTCATGTAAACAGCAGAGGTTCGTGAGCTAGCTAACCAGCTACATAGATGTTAGGGCGTTGATACCGGCGATATTGTTCAAATGTAGCTTTCAATCAATATATTTGTCTTTCTTTACCACACATCGCATTGTCTAGCAGGATAATCTGACCTGTGAGACCCTTATCGACACCGAGGATACCTCCTTTTGTTGTTTTGATCAGTGATTCGAGAAGGCTAACGTTAcggtagctagcaagttaacgtTAGACAGCATAGTTTGGGTTCTTGCAACGTTGAGCTTCAAAGCTCGAATGTAAGGGCGGGTTTCTTTCTCTTACATTGTTTACATTTTAGCTAACTTTAGATAGCTATCAACCTAACGTGACCGTCTTGCTAGCTTAGTTATAGTCTGTCAACTGTCGTTTTGCTAGCCATGATTTGACTTCGAAAACAGCAGGTATACCATTATGATATTATTGATTTGGTGCTTTGACTGTTTGGTCGTTTCTAGCTAAACAGCTTAGCTGGTAATACAGTAGTTAAAATGTCATGTTTGGGTGAGGTAGCCAAGTGTATGTCCCTTTGTTAGTTAGCTATATATTCGACACGCTGGTTTCATGGCACTTAAAATACCAACATTATGTATTTTAGCAGGCTTGTAACAACTGTGTGGGACACTCGCTAGATCGTTAATTAATTAGCTTGCTGGGCTGTAATCAACCTGTGAGTAGCCTAGGCCGAAAACGGACTGTGACAAACAACTTGTCACTGCAGCCTAACGTTATATTGCCCACGACACGTAACCAGCTGCAAGGCCTGTCATTAGGACAATACAATCAATACATGTTAACTGAAAACAGGAAACGCCAGCGGAGTGGTGGGGAAGAGGAGAATGGCCAGCTGGTGCCTAAGGCCAAAAGGTCGAGCAGAGGAGCTAACCCCCTCTCtcctgagctgggactggatgCCTGGGACTCTGAGTTGTCCAACAGTGAGAGCAGAGGGATTAGCAGTCCGGACCATGCGGTGGGGAGCAGCAGTAGTAGCCAGTGTGCTGTGGACAGCCTCAGTGGGGCCCAACCCTACGCCCCTGGCCCATGTAGTCCCCTCAGCTCGGCTCTCTCCTCAGAGCTAGCTGACCCCACTAACCTGGTCTCGTACCATCAAATCAACCGCATCCTACGAGAGGCCCACTTTGAGAGTCTGCAGTGCCGAGGCCACCCCAGAGATGCGTGATGATTTCCCCCCATTCCAGCCATGCCTCTGGGGCAGGAGAGGACCGACCACAACCTGGGCATGCCCGGAGCATTACATGGTGGATCACTCACTCAGCTCTACTACCCCTCTACATCTCCTGTTTCCATAACATCACAGCAGCTCTATGCTGTCTGCATATCGTTGGATGGAGACTAGCTAGTCCAGGCCTGCTTTATTATTGAAACTTGGCAATCCATTTAGAATGTAAAAAGAAACCTGTTCATATTGTTGGCAATAATAACTCTTTGATCCAATTGGGA
>XM_021595432.2
GAAACAGCGACACCATGTGGTATCTCCTGTCAACGTTCTGTCTGTACTGCGCAGTCGCGGTGTCATGTAAACAGCAGAGGTTCGTGAGCTAGCTAACCAGCTACATAGATGTTAGGGCGTTGATACCGGCGATATTGTTCAAATGTAGCTTTCAATCAATATATTTGTCTTTCTTTACCACACATCGCATTGTCTAGCAGGATAATCTGACCTGTGAGACCCTTATCGACACCGAGGATACCTCCTTTTGTTGTTTTGATCAGTGATTCGAGAAGGCTAACGTTAcggtagctagcaagttaacgtTAGACAGCATAGTTTGGGTTCTTGCAACGTTGAGCTTCAAAGCTCGAATGAAACGCCAGCGGAGTGGTGGGGAAGAGGAGAATGGCCAGCTGGTGCCTAAGGCCAAAAGGTCGAGCAGAGGAGCTAACCCCCTCTCtcctgagctgggactggatgCCTGGGACTCTGAGTTGTCCAACAGTGAGAGCAGAGGGATTAGCAGTCCGGACCATGCGGTGGGGAGCAGCAGTAGTAGCCAGTGTGCTGTGGACAGCCTCAGTGGGGCCCAACCCTACGCCCCTGGCCCATGTAGTCCCCTCAGCTCGGCTCTCTCCTCAGAGCTAGCTGACCCCACTAACCTGGTCTCGTACCATCAAATCAACCGCATCCTACGAGAGGCCCACTTTGAGAGTCTGCAGTGCCGAGGCCACCCCAGAGATGCGTGATGATTTCCCCCCATTCCAGCCATGCCTCTGGGGCAGGAGAGGACCGACCACAACCTGGGCATGCCCGGAGCATTACATGGTGGATCACTCACTCAGCTCTACTACCCCTCTACATCTCCTGTTTCCATAACATCACAGCAGCTCTATGCTGTCTGCATATCGTTGGATGGAGACTAGCTAGTCCAGGCCTGCTTTATTATTGAAACTTGGCAATCCATTTAGAATGTAAAAAGAAACCTGTTCATATTGTTGGCAATAATAACTCTTTGATCCAATTGGGA

Function

NR:

description
uncharacterized protein LOC110517310 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941864.1 False 1553 mRNA 0.47 3 63307181 63309138
XM_021595432.2 True 1012 mRNA 0.51 3 63307181 63309144
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486089 LOC106606381 coding downstream 88366 63032412 ~ 63218815 (-)
LOC110487151 LOC105012845 coding downstream 349775 62937168 ~ 62957406 (-)
LOC118938348 LOC106606427 coding downstream 380262 62899607 ~ 62926919 (-)
LOC110487064 lg3bp coding downstream 794752 62506293 ~ 62512429 (-)
LOC118938345 LOC106595712 coding downstream 807991 62495039 ~ 62499190 (-)
LOC110487088 otop2 coding upstream 47341 63356485 ~ 63361782 (-)
LOC110487424 otop2 coding upstream 60548 63369692 ~ 63399197 (-)
LOC110485274 LOC106606392 coding upstream 110205 63419349 ~ 63421498 (-)
LOC110487426 LOC106606390 coding upstream 139351 63448495 ~ 63461634 (-)
LOC110485277 LOC106602060 coding upstream 186215 63495359 ~ 63509387 (-)
G1195001 NA non-coding downstream 1118 63304385 ~ 63306063 (-)
G1194993 NA non-coding downstream 25502 63281339 ~ 63281679 (-)
G1194992 NA non-coding downstream 31960 63275001 ~ 63275221 (-)
G1194988 NA non-coding downstream 53576 63248672 ~ 63253605 (-)
G1194987 NA non-coding downstream 66422 63239697 ~ 63240759 (-)
G1195018 NA non-coding upstream 27797 63336941 ~ 63340383 (-)
G1195021 NA non-coding upstream 36290 63345434 ~ 63346313 (-)
G1195023 NA non-coding upstream 38517 63347661 ~ 63366471 (-)
G1195040 NA non-coding upstream 93652 63402796 ~ 63403851 (-)
G1195039 NA non-coding upstream 96734 63405878 ~ 63406453 (-)
G1194933 NA other downstream 169459 63137040 ~ 63137722 (-)
G1194684 NA other downstream 370108 62935786 ~ 62937073 (-)
G1194521 NA other downstream 571471 62730954 ~ 62735710 (-)
G1195624 NA other upstream 635932 63945076 ~ 63945764 (-)
LOC110487482 LOC106606373 other upstream 1025549 64334669 ~ 64362841 (-)
G1195997 NA other upstream 1167826 64476970 ~ 64477372 (-)
G1196113 NA other upstream 1485504 64794648 ~ 64795071 (-)

Expression

LOC110517310(LOC106601910) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110517310(LOC106601910) Expression in each Bioproject

Bar chart with 21 bars.
LOC110517310(LOC106601910) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network