LOC110487432 (LOC106606393)


Basic Information

Item Value
gene id LOC110487432
gene name LOC106606393
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63409911 ~ 63418900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941874.1
tgagaaaaggggagaaagagagacaagggaGGAGTGTAACAAAAGGAGGCTCCTGCTGCTGCCGCTGACTCACACGGATAAAGTTACTAAGGCGCGGTGCTCAGTTCTGTTCTTGTCTTCTCACTACATTATCTTGAGTTAGGGAGCTggacagagagttagagaggagactTTCAGAGAGACAGTCTTAGGGTGTGAGAGTTAGGGAGCTggacagagagttagagaggagactTTCAGAGAGACAGTCTTAGGGTGTGAGAGTTAGGGCGAGAGACGGtgagagtgaaagaaagacagagagcgaggaaGTGTttttgagagagatagagagagagagaaagtgacttACTGAGCGAGAGAATAGGAATTATAAGAGTAGTGAGGCCTGTATAGGATGTCATGATAGACTAAGATGTGAAGAAAGATCTGCACCGTCTGCCTGTTCAGGcccagagacccagacagaggcCCAGCTGTCTCACCCTGCAGCctgaagtagagaggagagagtaagggaGGTACTGTGTCTTGGCACACCAGCAACACACAGGACATCCACAAGCCAGAGAAAGAGAACATGGAGACCCTCATCATCAAGAATGAAGAGAATACAGAAGAGAGTCATCCCACAACTGGAAGCAAAGATGTCACCACATCCATGATAAACATGTGGGACCTGAACCTAAACCAGGAACAAGAGGACCCAACAACAACGCACGATAAGCCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACACAACAACAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCACGATAAACCAGGGCAGAACACCCAGTCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGATCCAACAAAAACGCACGATAAACCAGGGCAGAACACCCAGCCTCAGAACCAGGAACAAGAGGATCCAACAAAAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCATGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCATGATAAACCAGGGGAGAACACCCAGCCTCAGTACCAGGAACAAGAGGACCCAACAGCAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCATCAACAACGCCCGATAAACCAGGGCAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCGGGAACAAGAGGACACAACAACAACGCACGATAAACCAGGGGAGAACACCCAGCCCCAGACAATCTCTAGCGGGTTTACTGTCACCCCAGAAGATGTGCTGTGCGACTCCTGCATTGAGATCCCGTGCCGGGCCCAGAAGTCCTGCCTCACCTGCCTGGTGTCGTACTGCGAGGCCCACCTCAGACCCCACCTGGAGAACCAGAGGTTCCAGAATCACCGGCTGGTGGAGCCCTTACAGGACATCGAGTGTCGCACCTGTGAGGAGCACCGGCTACCGCTTGAACTATACTGCCTGACGGACggctgcggtgtgtgtgtgtgctgcgagTGTGAGGGACAGGGGCATCTGGGGCACAGTACTGTACCTGTAGAGGAGGCTCGAAGACAGATCCAGAGCTCGGTGGCAGGGGTACGTGCTGTGATGGAGCAGCAGTTCTATCTGCTGCAAGGGGCCGTAGAAGAGGCCCGGAGGAGGGCCACGGAGGTTCTGGAGGGGGAGCAGAGGCAGGCGCTCAGTCAGGCCGAGGGCATCCAGGCCCACCTGGAGCAGAAGAGCCAAGAGCTGAAGAAGACCCTGGCCAGAGTGGAGAGACTCTTCAGGAACAAGAGGGATGTAGACTTCCTGCAGGAATACTCCGAGTGGAAGACGGGGGCTGTGGATATCTGTCTGCCTGGGCTCTACGTCGGCCTCACAGATCGCCTGGCCTCCTTCAGCTGCCTGCTCACTGAGTCCACCCAGGAACTGTGTGACCAGCTCAAGGCTACCTACAGGGACAAACTGAAGGACATCTGCAGGACTGAGAAACTGGGCATTACAACCATGGTCCATCCCAAGATGTCAAAGTCTTTTTCACTGCCTGAGCCTGAGATGCGAGACGACTTCCTCACGTATGCCAGCAGTCTGACCTTTGACCCAGACACTGTCCACAAGTTCCTGAGACTAACTGAAGACGACAGGAAGGTGACCAACACCACGCCCTGGCAGCACAGCTACCCAGACACGCCCGAACGCTTCGAGTACTGGCGCCAGGTGATGACCTCAGAGAGCCTCTACCTGGGCCGACACTACTTTGAGGCAGAGTTGAGTGGGGAGGGCGTGCACGTGGGACTCACCTACAAGAGCATCGACCGGAAAGGCGTGGAGAGAGGCAGCTGCATCACAGGAAATGACTTCTCGTGGAGCCTCGGAAGGGAGGGGCGGAGCTTTTCCACTTGGCATGCTGATATGGAGGCGGTCGTGGAAGCCACAAGTGTGTTCACGAGAATCGGCGTCTACATCGACTTTGACTCAGGCTCATTAGCTTTCTATGGTGTGACTGACATCGCTATGACACTCCTCCACAGGTACAAGGCTGAGTTCATGGAGCCCTTGTATCCTACTGTCTGGCTCTCAAAGAAGGACAGTGTGGTGTTATTGGTTGGTCCTAAGGACCCCCCACTAATGAAGAGCTCAACTCTGCCTGCCACCCCCATCACTCCCGTGGCAACATCAGCTCCTGTCAGTCCAGAATCATAATACTTTGACTGCAGAAGTGTAGTTAGGTTAGAGAGGCGGACCAGTACACATTTCTGTTTCTCACAAATACAATAAAGTATCTATTCTATTCATAAGCAGTTGCCTTAAGTGACTGATACTGTACTTATTTAACAGGACACAGCATCAAGTATCACAAGACAACAGACAGGGAATTTACAGGGGGTATCTGCactcatccaggacctatatactaggcggtgtcagaggaaggcccaaaaaaaaaaattctccagATTCCAGTCACCCaactcatagactgttctctct
>XM_036941873.1
gaaaaggggagaaagagagacaagggaGGAGTGTAACAAAAGGAGGCTCCTGCTGCTGCCGCTGACTCACACGGATAAAGTTACTAAGGCGCGGTGCTCAGTTCTGTTCTTGTCTTCTCACTACATTATCTTGAGTTAGGGAGCTggacagagagttagagaggagactTTCAGAGAGACAGTCTTAGGGTGTGAGAGTTAGGGAGCTggacagagagttagagaggagactTTCAGAGAGACAGTCTTAGGGTGTGAGAGTTAGGGCGAGAGACGGtgagagtgaaagaaagacagagagcgaggaaGTGTttttgagagagatagagagagagagaaagtgacttACTGAGCGAGAGAATAGGAATTATAAGAGTAGTGAGGCCTGTATAGGATGTCATGATAGACTAAGATGTGAAGAAAGATCTGCACCGTCTGCCTGTTCAGGcccagagacccagacagaggcCCAGCTGTCTCACCCTGCAGCctgaagtagagaggagagagtaagggaGGTACTGTGTCTTGGCACACCAGCAACACACAGGACATCCACAAGCCAGAGAAAGAGAACATGGAGACCCTCATCATCAAGAATGAAGAGAATACAGAAGAGAGTCATCCCACAACTGGAAGCAAAGATGTCACCACATCCATGATAAACATGTGGGACCTGAACCTAAACCAGGAACAAGAGGACCCAACAACAACGCACGATAAGCCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACACAACAACAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCACGATAAACCAGGGCAGAACACCCAGTCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGATCCAACAAAAACGCACGATAAACCAGGGCAGAACACCCAGCCTCAGAACCAGGAACAAGAGGATCCAACAAAAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCATGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCATGATAAACCAGGGGAGAACACCCAGCCTCAGTACCAGGAACAAGAGGACCCAACAGCAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCATCAACAACGCCCGATAAACCAGGGCAGAACACCCAGCCTCAGAACCAGGAACAAGAGGACCCAACAACAACGCACGATAAACCAGGGGAGAACACCCAGCCTCAGAACCGGGAACAAGAGGACACAACAACAACGCACGATAAACCAGGGGAGAACACCCAGCCCCAGACAATCTCTAGCGGGTTTACTGTCACCCCAGAAGATGTGCTGTGCGACTCCTGCATTGAGATCCCGTGCCGGGCCCAGAAGTCCTGCCTCACCTGCCTGGTGTCGTACTGCGAGGCCCACCTCAGACCCCACCTGGAGAACCAGAGGTTCCAGAATCACCGGCTGGTGGAGCCCTTACAGGACATCGAGTGTCGCACCTGTGAGGAGCACCGGCTACCGCTTGAACTATACTGCCTGACGGACggctgcggtgtgtgtgtgtgctgcgagTGTGAGGGACAGGGGCATCTGGGGCACAGTACTGTACCTGTAGAGGAGGCTCGAAGACAGATCCAGACAGAGCTGCAGAAGAAACAAGGGGAGATTATGAAGACCGTCTCAGTGGCAGAGAATTCCATTGGCAAGCTACAGAGCAACACTGCATCCATAGAGAGCTCGGTGGCAGGGGTACGTGCTGTGATGGAGCAGCAGTTCTATCTGCTGCAAGGGGCCGTAGAAGAGGCCCGGAGGAGGGCCACGGAGGTTCTGGAGGGGGAGCAGAGGCAGGCGCTCAGTCAGGCCGAGGGCATCCAGGCCCACCTGGAGCAGAAGAGCCAAGAGCTGAAGAAGACCCTGGCCAGAGTGGAGAGACTCTTCAGGAACAAGAGGGATGTAGACTTCCTGCAGGAATACTCCGAGTGGAAGACGGGGGCTGTGGATATCTGTCTGCCTGGGCTCTACGTCGGCCTCACAGATCGCCTGGCCTCCTTCAGCTGCCTGCTCACTGAGTCCACCCAGGAACTGTGTGACCAGCTCAAGGCTACCTACAGGGACAAACTGAAGGACATCTGCAGGACTGAGAAACTGGGCATTACAACCATGGTCCATCCCAAGATGTCAAAGTCTTTTTCACTGCCTGAGCCTGAGATGCGAGACGACTTCCTCACGTATGCCAGCAGTCTGACCTTTGACCCAGACACTGTCCACAAGTTCCTGAGACTAACTGAAGACGACAGGAAGGTGACCAACACCACGCCCTGGCAGCACAGCTACCCAGACACGCCCGAACGCTTCGAGTACTGGCGCCAGGTGATGACCTCAGAGAGCCTCTACCTGGGCCGACACTACTTTGAGGCAGAGTTGAGTGGGGAGGGCGTGCACGTGGGACTCACCTACAAGAGCATCGACCGGAAAGGCGTGGAGAGAGGCAGCTGCATCACAGGAAATGACTTCTCGTGGAGCCTCGGAAGGGAGGGGCGGAGCTTTTCCACTTGGCATGCTGATATGGAGGCGGTCGTGGAAGCCACAAGTGTGTTCACGAGAATCGGCGTCTACATCGACTTTGACTCAGGCTCATTAGCTTTCTATGGTGTGACTGACATCGCTATGACACTCCTCCACAGGTACAAGGCTGAGTTCATGGAGCCCTTGTATCCTACTGTCTGGCTCTCAAAGAAGGACAGTGTGGTGTTATTGGTTGGTCCTAAGGACCCCCCACTAATGAAGAGCTCAACTCTGCCTGCCACCCCCATCACTCCCGTGGCAACATCAGCTCCTGTCAGTCCAGAATCATAATACTTTGACTGCAGAAGTGTAGTTAGGTTAGAGAGGCGGACCAGTACACATTTCTGTTTCTCACAAATACAATAAAGTATCTATTCTATTCATAAGCAGTTGCCTTAAGTGACTGATACTGTACTTATTTAACAGGACACAGCATCAAGTATCACAAGACAACAGACAGGGAATTTACAGGGGGTATCTGCactcatccaggacctatatactaggcggtgtcagaggaaggcccaaaaaaaaaaattctccagATTCCAGTCACCCaactcatagactgttc

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941874.1 False 3253 mRNA 0.53 5 63409911 63418900
XM_036941873.1 True 3341 mRNA 0.53 6 63409914 63418895
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Neighbor

gene id symbol gene type direction distance location
LOC110487153 LOC106606395 coding upstream 3427 63377188 ~ 63406484 (+)
hid1a LOC104925062 coding upstream 61692 63309496 ~ 63348219 (+)
LOC118938099 NA coding upstream 102593 63254874 ~ 63307318 (+)
LOC110486092 LOC106601958 coding upstream 429218 62976416 ~ 62980693 (+)
LOC110486094 LOC106601958 coding upstream 441890 62963715 ~ 62968021 (+)
fa18b LOC106602067 coding downstream 3006 63421906 ~ 63426370 (+)
LOC110485275 LOC106606389 coding downstream 7705 63426605 ~ 63448494 (+)
LOC110487433 LOC106606396 coding downstream 103313 63522213 ~ 63534446 (+)
LOC110487154 LOC106606388 coding downstream 116119 63535019 ~ 63541178 (+)
LOC110487431 LOC106606352 coding downstream 232449 63651349 ~ 63667849 (+)
G1194836 NA non-coding upstream 26588 63382712 ~ 63383323 (+)
G1194822 otop2 non-coding upstream 36562 63361359 ~ 63373349 (+)
G1194777 NA non-coding upstream 64809 63343639 ~ 63345102 (+)
G1194794 NA non-coding upstream 100833 63291050 ~ 63309078 (+)
G1194851 NA non-coding downstream 21231 63440131 ~ 63440364 (+)
G1194866 NA non-coding downstream 48959 63467859 ~ 63468205 (+)
G1194869 NA non-coding downstream 54070 63472970 ~ 63473221 (+)
G1194870 NA non-coding downstream 60437 63479337 ~ 63479542 (+)
G1194871 NA non-coding downstream 61245 63480145 ~ 63480489 (+)
G1194741 LOC106606381 other upstream 305817 63103300 ~ 63104094 (+)
G1194739 NA other upstream 318569 63090303 ~ 63091342 (+)
G1194696 LOC106601958 other upstream 430780 62963609 ~ 62979131 (+)
LOC110485308 LOC106601924 other upstream 807164 62569908 ~ 62605641 (+)
G1193989 NA other upstream 1218865 62189725 ~ 62191046 (+)
LOC118936377 LOC106606343 other downstream 267123 63686009 ~ 63692526 (+)
LOC110487456 LOC106593034 other downstream 281871 63700749 ~ 63714263 (+)
G1195223 NA other downstream 334048 63752948 ~ 63754685 (+)
LOC110487419 dpod1 other downstream 447778 63866573 ~ 63903684 (+)
G1195428 NA other downstream 900231 64319131 ~ 64332402 (+)

Expression

LOC110487432(LOC106606393) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110487432(LOC106606393) Expression in each Bioproject

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LOC110487432(LOC106606393) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network