LOC110485275 (LOC106606389)


Basic Information

Item Value
gene id LOC110485275
gene name LOC106606389
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63426605 ~ 63448494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939777.1
ATGACTGCGACAGATGAAACATATTTGTGGAGAGAGAAGATTGAGGAGAAGCTCAAACGGGATCAAGATCTGCTGACATTCGTTAGCGACAGCCTCAAAAGAAGTGATCAGCTGACTAAAGGCATGGTGTCCATTCTCTCGTCGTTGGAGGGCCGTTTGGAGCACCTGGAGAACTCGGTCATTCCCATGCACGACAGCACACAGAACCTACTGCAGCTGAAGGGGACAACGCAGAAGACATTATTCTACCTGGACGATGCCATCAGTCATTACCAAGCCGTCCGAGACACAGACAAGGTCATCATACAGGGGCCTACAGGAAGACTTTCTGACTATCTAGCCTGTGTTCACCGACTCAAGAAAGCAGAGGAGTACTTTCAACAGGAAGACCCGGACGGGCCTGAGCTGAATATGCTGAGAGGTCGTTTAGAGAGTGCCAAGTCACAGCTGGAGTCCGAGTTCCAAGTCCTGTTGGGGCGCTACAGCAAGCCAGTGCAGACAGTCAGAATCCTGGATGTCCTGGACAAAAAGTCACTGAATGGGTCTGCAGGCGGAGTGGAGGAGGTACAACTCATACCCCAAACTAGGCTTCAGGACATCATCTCCATCTCCACCTGGCTGATAGGTGAGGATGCAGCTCTGACAGCTAAGAGGAGAGTCTCTGCCAGTAAATTCAAAACTCGGTCACTGGAAAGAAACCCATCCCACCACTCTCTGGGAAAACTGGAGCCCAGCAGCCTTTTCACCAATAAATCCTACTGCTCCAAACTCAAAACACAGTCTCTAGGCAGAAAGCCATCCATAGAAAACAAGCCATCAATGGACTCTCTTGGAAAACTGAAAGCAAACAGCCTGTTCACCAAGATGATCGGCCTGAAGTCATTTGGTCAATTCAAAACGCTGTCCCTGGACAGAAAGCCATCACTAGACAAGAATCCATCACTAGACTCCCTTGGAAAACTGGAATCCAGTTGCTCTTTCACCAAGGTATCCACCTCGAAGCTGTGCAGCAGACTGAATATTCCCGATATTAGACAACCATCTTTGGAGTCCATCCCATTTCTGCCTAGAGACTCCACCTCCCATACCTACCCATCTTGCAAACCCAAGCCCCCAGCTTCCACCTCCTACATCCTGCCATACTtcagacccaagcccagctcagccTTTGACCTCAAGGCCCACTACGCCATGGTGCGCTCCAATCAGTTGGACTGCTCCATGAAGGGTTTGAAGGACCACAAGAGTAGGAACCTCCTCTGCCCGGTGTTGCAGAGCAGGCGTGTGGATTCTGCCGTCAAGAAGAACAAAAAAACAGGGCGGGACAGCATATTACACATTGAGATTGAGACCTACATGGCCTGCATCACGGCCTTCTTGTCCCTGGCCAAGAGTGAATACACCATGGTGTCCAAAGTCTTCCCTCTGAACTGCTCCAATACCTTTGAAACTCTCATCCAGGTGGCTCTGAACCAGCTGATCCGGAATGGGGAGAACATCATGTCCTCTGTCAGACGAGCTTGTTCACGTCACGACTACACAGCCCTTGTCGCCATGTTACCTGTCCTGGGCCGTCTCATGGAGGAGGACAAAGAGTTTAACACGTTACTAAAGTGCACAACAAGCGGCACCTTGGCCAAGCTTTCCAAACTCGTTACATCTATGAAGACCCTGGCAGCCAGAGCACTGACAGACTTTTCTGCTCACGTCAAGACCAACCCTGATAGGGAGAGTATGTCCAAGGATGGAACGGTGCATGAATTCAACAGCAATACAATTCTATTCCTGCAGCAGTTGCTGTCCTTTGCAGATGCTGTTCGGTCCATCCTTTATCCTCATGATGTAGACAGTGACACAGTAACTATGGAGGTGTCCAGTAGTGTTCAGGTGGACGTTCAACATGACACTGATGCAGATGAATCAGAAGAACAGCCATCAGACAGTCAGGAGTCCAAGGGGAATGACAATCAGAGAGCACTGAGTCCTTATGTCTGTAAAGTGCTGGAGCATCTCCAGTACAACCTACAGAGTAAGGCCAAGGTGTACGAGGACCACGCTCTCGGGGCCATCTTCCTCctcaacaactacaactacatcCTCAAgtcaatgaagaaGTCATCTCTGTTTGAAGTGGTTAAAACCAGCGGCAGGGATCCGGAGGTTGAGTACGGGGAACTGATTGAGCAACAGAAGCAGGTGTACCAGCACAGTTGGTTGAAGGTGACCGAGTGCCTGACTGAAAAGAATCTGCCCACCTTTAAGCCAGGTGACAAGGTGAGGTTGAAAGAGAAAGACTGTCAGGTGATTAAAGACAAGTTCAAGAGCTTCAACGAGGGCCTGGAGGAACTGTATAAGGCTCAGAAAGCGTGGGCCAtcccagacagagagcagcgccAGGCCATCTGTCAGGCCCAGAGAGAGGTGGTGTCCAAGGCCTACACAGCCTTTCTGCTGAGGGGAGTCATGGCATATCACAGAGCTTATTACTGGAGACTGCTGCTGAATTCAGAATCAACTATTCCCTAGCCCTTACTCCATATTCACT

Function

NR:

description
PREDICTED: exocyst complex component 7-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939777.1 True 2545 mRNA 0.50 18 63426605 63448494
Loading

Neighbor

gene id symbol gene type direction distance location
fa18b LOC106602067 coding upstream 235 63421906 ~ 63426370 (+)
LOC110487432 LOC106606393 coding upstream 7705 63409911 ~ 63418900 (+)
LOC110487153 LOC106606395 coding upstream 20121 63377188 ~ 63406484 (+)
hid1a LOC104925062 coding upstream 78386 63309496 ~ 63348219 (+)
LOC118938099 NA coding upstream 119287 63254874 ~ 63307318 (+)
LOC110487433 LOC106606396 coding downstream 73719 63522213 ~ 63534446 (+)
LOC110487154 LOC106606388 coding downstream 86525 63535019 ~ 63541178 (+)
LOC110487431 LOC106606352 coding downstream 202855 63651349 ~ 63667849 (+)
LOC110487417 LOC106606343 coding downstream 223504 63671998 ~ 63681018 (+)
LOC118936377 LOC106606343 coding downstream 237515 63686009 ~ 63692526 (+)
G1194836 NA non-coding upstream 43282 63382712 ~ 63383323 (+)
G1194822 otop2 non-coding upstream 53256 63361359 ~ 63373349 (+)
G1194777 NA non-coding upstream 81503 63343639 ~ 63345102 (+)
G1194794 NA non-coding upstream 117527 63291050 ~ 63309078 (+)
G1194866 NA non-coding downstream 19365 63467859 ~ 63468205 (+)
G1194869 NA non-coding downstream 24476 63472970 ~ 63473221 (+)
G1194870 NA non-coding downstream 30843 63479337 ~ 63479542 (+)
G1194871 NA non-coding downstream 31651 63480145 ~ 63480489 (+)
G1194872 NA non-coding downstream 32255 63480749 ~ 63480958 (+)
G1194741 LOC106606381 other upstream 322511 63103300 ~ 63104094 (+)
G1194739 NA other upstream 335263 63090303 ~ 63091342 (+)
G1194696 LOC106601958 other upstream 447474 62963609 ~ 62979131 (+)
LOC110485308 LOC106601924 other upstream 823858 62569908 ~ 62605641 (+)
G1193989 NA other upstream 1235559 62189725 ~ 62191046 (+)
LOC110487456 LOC106593034 other downstream 252277 63700749 ~ 63714263 (+)
G1195223 NA other downstream 304454 63752948 ~ 63754685 (+)
LOC110487419 dpod1 other downstream 418184 63866573 ~ 63903684 (+)
G1195428 NA other downstream 870637 64319131 ~ 64332402 (+)

Expression

LOC110485275(LOC106606389) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
End of interactive chart.

LOC110485275(LOC106606389) Expression in each Bioproject

Bar chart with 17 bars.
LOC110485275(LOC106606389) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.

Co-expression Network