LOC110487456 (LOC106593034)


Basic Information

Item Value
gene id LOC110487456
gene name LOC106593034
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63700749 ~ 63714263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941891.1
ATGCGTCATCATCGATGACTACCAGAAATGTATCaaaacattagctagttagctggttacgCACTAGCGTGTCCTCCCACCTAAAATAATACTACAGACTACTCTGTCAAATAATATACATTGATTATACACATGTTTGGATACCTGTGCTTTTCGTTATAGTTAGGcagttcgctagctagctaacgttatattcCAAAAATATTCAATTGTCTGCGTTGGAAGAGGTAGACAGACGAGCTGTGTGGGAGGAGGCCATAACCAGGACGAGAGCGAAGTCGGAGAGGCCGCTTGTTACCTGAGGGGAGGGCATCGAAACGCCAGCCGCAGCCCGGCCTGAGACACGGGTAGCAGGATAGGGAAGCAGAGCGGAGAGGCCGCCGCCACAGCGGGGCCGGCGGACAAAATGGCGGGCAGCCCTGAGAAGAGTGTCTCAGCGCAGGAGtggaaggagcagggcaaccgcCTCTTCCTCAGCCGCAAGTACCAGGAGTCGGCCGCCTGCTACAGCAAAGCCATCCGAAACCCCTCAGTGTCtgtgtactacaccaaccgggCACTGTGCCACGTGAAGCTGCAGCAACACGACAAGGCCCTGGCCGACTGCAAGCAGGCGCTGGAGCTGGACCCCCAGTCAGTCAAGGCCCTCTTCTTCCTGGGTCAGTGTCACCTGGAGATGGAGAATTACGACGaagccatcggcaacctgcagagagCATATAACCTGGCGAAAGAGCAACGGTTGAACTTTGGCGACGACATTCCCAGTGCCCTCCGGATAGccaagaagaagcgctggaacaGCATCGAGGAGAAGCGCATTAACCAGGAGAACGAGCTGCATGCCTATCTCACCAAACTCATCctggcagagaaggagagGGAACTGGATGACAGCAGAGAGGACCAAGACGCCAAGTCGGAGGAATGCAGAAGCCGACACGACCTCACTAAGTTCCCCTCCAAACACGACAAGCACCTGTCAGACATGGAGGAGCTCTTCTCTCAACTGGATGAGAAGAGGAAGAAGAGGGAGATCCCAGACTACCTGTGTGGAAAGATCAGCTTTGAGTTGATGAGGGAGCCCTGCATTACACCCAGTGGGATCACTTACGACCGCAAAGACATCGAGGAGCACCTACAGCGAGTGGGCCATTTTGACCCGGTGACACGCAGCCCTCTGACTCAAGACCAGCTGATTCCTAATCTGGCCATGAAAGAGGTCATCGATGCTTTCATCATGGAGAATGGATGGGTGGAGGACtactgaaggagggagggagagagggaaaggggtagTTGGAATCATTCCAAAAGAAGAACCAGACATAAAAAGACGACAACAAACCAAACAAGTATGATCTGCACTTTAAAGCTGAGGCCACACCACAGACTGACATACCTTCACTAGGACTGAGACCACACCACAGACTTACATACCTTCACTAGGACTGAGACCACACCACAGACTGACATACCTTCACTAGGACTgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacataccttcactaggactga
>XM_036941889.1
TGCGTCATCATCGATGACTACCAGAAATGTATCaaaacattagctagttagctggttacgCACTAGCGTGTCCTCCCACCTAAAATAATACTACAGACTACTCTGTCAAATAATATACATTGATTATACACATGTTTGGATACCTGTGCTTTTCGTTATAGTTAGGcagttcgctagctagctaacgttatattcCAAAAATATTCAATTGTCTGCGTTGGAAGAGGTAGACAGACGAGCTGTGTGGGAGGAGGCCATAACCAGGACGAGAGCGAAGTCGGAGAGGCCGCTTGTTACCTGAGGGGAGGGCATCGAAACGCCAGCCGCAGCCCGGCCTGAGACACGGGTAGCAGGATAGGGAAGCAGAGCGGAGAGGCCGCCGCCACAGCGGGGCCGGCGGACAAAATGGCGGGCAGCCCTGAGAAGAGTGTCTCAGCGCAGGAGtggaaggagcagggcaaccgcCTCTTCCTCAGCCGCAAGTACCAGGAGTCGGCCGCCTGCTACAGCAAAGCCATCAAGCGAAACCCCTCAGTGTCtgtgtactacaccaaccgggCACTGTGCCACGTGAAGCTGCAGCAACACGACAAGGCCCTGGCCGACTGCAAGCAGGCGCTGGAGCTGGACCCCCAGTCAGTCAAGGCCCTCTTCTTCCTGGGTCAGTGTCACCTGGAGATGGAGAATTACGACGaagccatcggcaacctgcagagagCATATAACCTGGCGAAAGAGCAACGGTTGAACTTTGGCGACGACATTCCCAGTGCCCTCCGGATAGccaagaagaagcgctggaacaGCATCGAGGAGAAGCGCATTAACCAGGAGAACGAGCTGCATGCCTATCTCACCAAACTCATCctggcagagaaggagagGGAACTGGATGACAGCAGAGAGGACCAAGACGCCAAGTCGGAGGAATGCAGAAGCCGACACGACCTCACTAAGTTCCCCTCCAAACACGACAAGCACCTGTCAGACATGGAGGAGCTCTTCTCTCAACTGGATGAGAAGAGGAAGAAGAGGGAGATCCCAGACTACCTGTGTGGAAAGATCAGCTTTGAGTTGATGAGGGAGCCCTGCATTACACCCAGTGGGATCACTTACGACCGCAAAGACATCGAGGAGCACCTACAGCGAGTGGGCCATTTTGACCCGGTGACACGCAGCCCTCTGACTCAAGACCAGCTGATTCCTAATCTGGCCATGAAAGAGGTCATCGATGCTTTCATCATGGAGAATGGATGGGTGGAGGACtactgaaggagggagggagagagggaaaggggtagTTGGAATCATTCCAAAAGAAGAACCAGACATAAAAAGACGACAACAAACCAAACAAGTATGATCTGCACTTTAAAGCTGAGGCCACACCACAGACTGACATACCTTCACTAGGACTGAGACCACACCACAGACTTACATACCTTCACTAGGACTGAGACCACACCACAGACTGACATACCTTCACTAGGACTgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacataccttcactaggactga
>XM_036941890.1
TGCGTCATCATCGATGACTACCAGAAATGTATCaaaacattagctagttagctggttacgCACTAGCGTGTCCTCCCACCTAAAATAATACTACAGACTACTCTGTCAAATAATATACATTGATTATACACATGTTTGGATACCTGTGCTTTTCGTTATAGTTAGGcagttcgctagctagctaacgttatattcCAAAAATATTCAATTGTCTGCGTTGGAAGAGGTAGACAGACGAGCTGTGTGGGAGGAGGCCATAACCAGGACGAGAGCGAAGTCGGAGAGGCCGCTTGTTACCTGAGCCAGCCGCAGCCCGGCCTGAGACACGGGTAGCAGGATAGGGAAGCAGAGCGGAGAGGCCGCCGCCACAGCGGGGCCGGCGGACAAAATGGCGGGCAGCCCTGAGAAGAGTGTCTCAGCGCAGGAGtggaaggagcagggcaaccgcCTCTTCCTCAGCCGCAAGTACCAGGAGTCGGCCGCCTGCTACAGCAAAGCCATCAAGCGAAACCCCTCAGTGTCtgtgtactacaccaaccgggCACTGTGCCACGTGAAGCTGCAGCAACACGACAAGGCCCTGGCCGACTGCAAGCAGGCGCTGGAGCTGGACCCCCAGTCAGTCAAGGCCCTCTTCTTCCTGGGTCAGTGTCACCTGGAGATGGAGAATTACGACGaagccatcggcaacctgcagagagCATATAACCTGGCGAAAGAGCAACGGTTGAACTTTGGCGACGACATTCCCAGTGCCCTCCGGATAGccaagaagaagcgctggaacaGCATCGAGGAGAAGCGCATTAACCAGGAGAACGAGCTGCATGCCTATCTCACCAAACTCATCctggcagagaaggagagGGAACTGGATGACAGCAGAGAGGACCAAGACGCCAAGTCGGAGGAATGCAGAAGCCGACACGACCTCACTAAGTTCCCCTCCAAACACGACAAGCACCTGTCAGACATGGAGGAGCTCTTCTCTCAACTGGATGAGAAGAGGAAGAAGAGGGAGATCCCAGACTACCTGTGTGGAAAGATCAGCTTTGAGTTGATGAGGGAGCCCTGCATTACACCCAGTGGGATCACTTACGACCGCAAAGACATCGAGGAGCACCTACAGCGAGTGGGCCATTTTGACCCGGTGACACGCAGCCCTCTGACTCAAGACCAGCTGATTCCTAATCTGGCCATGAAAGAGGTCATCGATGCTTTCATCATGGAGAATGGATGGGTGGAGGACtactgaaggagggagggagagagggaaaggggtagTTGGAATCATTCCAAAAGAAGAACCAGACATAAAAAGACGACAACAAACCAAACAAGTATGATCTGCACTTTAAAGCTGAGGCCACACCACAGACTGACATACCTTCACTAGGACTGAGACCACACCACAGACTTACATACCTTCACTAGGACTGAGACCACACCACAGACTGACATACCTTCACTAGGACTgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacataccttcactaggactga
>TU1363689
CAGAAATGTATCaaaacattagctagttagctggttacgCACTAGCGTGTCCTCCCACCTAAAATAATACTACAGACTACTCTGTCAAATAATATACATTGATTATACACATGTTTGGATACCTGTGCTTTTCGTTATAGTTAGGcagttcgctagctagctaacgttatattcCAAAAATATTCAATTGTCTGCGTTGGAAGAGGTAGACAGACGAGCTGTGTGGGAGGAGGCCATAACCAGGACGAGAGCGAAGTCGGAGAGGCCGCTTGTTACCTGAGGGGAGGGCATCGAAACGCCAGCCGCAGCCCGGCCTGAGACACGGGTAGCAGGATAGGGAAGCAGAGCGGAGAGGCCGCCGCCACAGCGGGGCCGGCGGACAAAATGGCGGGCAGCCCTGAGAAGAGTGTCTCAGCGCAGGAGtggaaggagcagggcaaccgcCTCTTCCTCAGCCGCAAGTACCAGGAGTCGGCCGCCTGCTACAGCAAAGCCATCAAGCGAAACCCCTCAGTGTCtgtgtactacaccaaccgggCACTGTGCCACGTGAAGCTGCAGCAACACGACAAGGCCCTGGCCGACTGCAAGCAGGCGCTGGAGCTGGACCCCCAGTCAGTCAAGGCCCTCTTCTTCCTGGGTCAGTGTCACCTGGAGATGGAGAATTACGACGaagccatcggcaacctgcagagagCATATAACCTGGCGAAAGAGCAACGGTTGAACTTTGGCGACGACATTCCCAGTGCCCTCCGGATAGccaagaagaagcgctggaacaGCATCGAGGAGAAGCGCATTAACCAGGAGAACGAGCTGCATGCCTATCTCACCAAACTCATCctggcagagaaggagagGGAACTGGATGACAGCAGAGAGGACCAAGACGCCAAGTCGGAGGAATGCAGAAGCCGACACGACCTCACTAAGTTCCCCTCCAAACACGACAAGCACCTGTCAGACATGGAGGAGCTCTTCTCTCAACTGGATGAGAAGAGGAAGAAGAGGGAGATCCCAGACTACCTGTGTGGAAAGATCAGCTTTGAGTTGATGAGGGAGCCCTGCATTACACCCAGTGGGATCACTTACGACCGCAAAGACATCGAGGAGCACCTACAGGTAAGGATTAGTCTCATCAAACCTGACCCTGACCTCATCA
>TU1363671
aggggtagTTGGAATCATTCCAAAAGAAGAACCAGACATAAAAAGACGACAACAAACCAAACAAGTATGATCTGCACTTTAAAGCTGAGGCCACACCACAGACTGACATACCTTCACTAGGACTGAGACTACACCACAGACTTACATACCTTCACTAGGACTgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacatACCTTCACCAGGACTgagactacaccacagactgacataccttcactaggactgagactacaccacagactgatACTAGGACTGCCATTAAATCTCATGTTGATCTAAACAATCTCTTTCTGTTTCCATCCTTGTCCCCCCATTTATTTTATTGTGTGTCTCAGCTGCTCATACTAGTCAGACCCAACAATCAGGACACGCTAGCAAACATTGCACCGAATCAGAGCACATCATCCAACAACAGGACCCAATCAGAATATAGTACCCAACACCTTTGGCCAATCTCTTGAACGTTACTCTCAGAACAACCAATCATATTGCAGACTCCTAAACCCAATCACATCCTAGACCTCGAGTCTACAAGTGCAGCGATTGACCAATCAGGGCTAAATGTACTCTACTTGTGGTGATGCTCCACAACTTGTCTTCTATTTTAAAATCTCCTTTTCTACGGGGAAGAGGACTGTCTGAGGCACCGCCATGTTTTCGCCACTCTCCATTGTAGTCCTCTTGAGTGGCTTGTAGATGGTCCAATGTAGTGCTCTTGAGTGATGGGCCAATTTTAAACCCAACCTGATCTCTTACCACCACAATGCAGCACTTCTCTATATCCTCTTGGAGGGCTGAAAAGACTGTATAAGCAGTTGTATAATATAGAGAGAAACCCAAGCCCTCATCTTCAGTGTTTTGCAGTGTGCAGGGAAGCACTATGTGTAATCAATATGATGGAAGGGTCCGGGAAGAGCATTCAAGGCTTTGTaaaaagggttgttttttgaCCAAGGACGTCTCTAATTTTGGCGAGCTGAGTTTCCACCATTTTGTTGCCTCTCATCTGGCTCATACAGAGCTGAGCGTTAATGAATGGGGAAGTGCGTAGCAGtaggggtcagggttggggtcaattctatttaaattccagtcaattaaACCCAATTCCACATCTTCTTTAAAAAGATTGGTTTAAAATTGTGTGAGTCACAGGTGTGTTTTTGACGGCTGTGTTTAATTGTAATGTGTTTTCTCTGGTTTTACATGTCACTGAATGTTTGCAGGTGGTGGGTGTCCTGTCTTGTGCCTCAAGTGGAGTTTGAAGTAGAATATGGAAGTCAGTCATCTGATTGGCTTTGAGAAGGGCTGTCTTCTCCTCCGTATAACTTACTGCTCGGGGTCTCTTTTGTTTTAATGATTCCATGCTTAGAGCCTTAGTCCAATGGCTGCAAAGCATGGTTGGGGTCGATTACATTTTTCAAGTGTCGATTTTAGAATGCAAATTCATAAATTAAAATAtcctgatttttaaaaaaaagtaattttCAATTCGACCCCTCAACCCTGCTGCAAACAGATCGTTTCCTCTTCTCATTTCAGAAATCATATGACCCTGTTTGACTTACCAACTGAAAAGGATTGAATGTGAAATGAACCTGTATATTCCTACCCTCTGCTGGATATGAGGATGCACAGTTATGTTGTGTTAGTCAGTCGTGAGTATCAATATTATGTGTACATGTAGGGGTGTGTTTATGTGGGATAGGGGTGTGGACATACTCCTCTCCCCCTAGGCCCCGATTCCTCCTAAGAGGGGGGTGGGAACTTGGGTACAGTCCAGTTTCTCTGGAGCCTCA
>TU1363673
aggggtagTTGGAATCATTCCAAAAGAAGAACCAGACATAAAAAGACGACAACAAACCAAACAAGTATGATCTGCACTTTAAAGCTGAGGCCACACCACAGACTGACATACCTTCACTAGGACTGAGACCACACCACAGACTGACATACCTTCACTAGGACTgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacataccttcactaggactgagactacaccacagactgacatACCTTCACCAGGACTgagactacaccacagactgacgTACCTTCACCAGGACTgagactacaccacagactgacatACCTTCACCAGGACTgagactacaccacagactgacataccttcactaggactgagactacaccacagactgatACTAGGACTGCCATTAAATCTCATGTTGATCTAAACAATCTCTTTCTGTTTCCATCCTTGTCCCCCCATTTATTTTATTGTGTGTCTCAGCTGCTCATACTAGTCAGACCCAACAATCAGGACACGCTAGCAAACATTGCACCGAATCAGAGCACATCATCCAACAACAGGACCCAATCAGAATATAGTACCCAACACCTTTGGCCAATCTCTTGAACGTTACTCTCAGAACAACCAATCATATTGCAGACTCCTAAACCCAATCACATCCTAGACCTCGAGTCTACAAGTGCAGCGATTGACCAATCAGGGCTAAATGTACTCTACTTGTGGTGATGCTCCACAACTTGTCTTCTATTTTAAAATCTCCTTTTCTACGGGGAAGAGGACTGTCTGAGGCACCGCCATGTTTTCGCCACTCTCCATTGTAGTCCTCTTGAGTGGCTTGTAGATGGTCCAATGTAGTGCTCTTGAGTGATGGGCCAATTTTAAACCCAACCTGATCTCTTACCACCACAATGCAGCACTTCTCTATATCCTCTTGGAGGGCTGAAAAGACTGTATAAGCAGTTGTATAATATAGAGAGAAACCCAAGCCCTCATCTTCAGTGTTTTGCAGTGTGCAGGGAAGCACTATGTGTAATCAATATGATGGAAGGGTCCGGGAAGAGCATTCAAGGCTTTGTaaaaagggttgttttttgaCCAAGGACGTCTCTAATTTTGGCGAGCTGAGTTTCCACCATTTTGTTGCCTCTCATCTGGCTCATACAGAGCTGAGCGTTAATGAATGGGGAAGTGCGTAGCAGtaggggtcagggttggggtcaattctatttaaattccagtcaattaaACCCAATTCCACATCTTCTTTAAAAAGATTGGTTTAAAATTGTGTGAGTCACAGGTGTGTTTTTGACGGCTGTGTTTAATTGTAATGTGTTTTCTCTGGTTTTACATGTCACTGAATGTTTGCAGGTGGTGGGTGTCCTGTCTTGTGCCTCAAGTGGAGTTTGAAGTAGAATATGGAAGTCAGTCATCTGATTGGCTTTGAGAAGGGCTGTCTTCTCCTCCGTATAACTTACTGCTCGGGGTCTCTTTTGTTTTAATGATTCCATGCTTAGAGCCTTAGTCCAATGGCTGCAAAGCATGGTTGGGGTCGATTACATTTTTCAAGTGTCGATTTTAGAATGCAAATTCATAAATTAAAATAtcctgatttttaaaaaaaagtaattttCAATTCGACCCCTCAACCCTGCTGCAAACAGATCGTTTCCTCTTCTCATTTCAGAAATCATATGACCCTGTTTGACTTACCAACTGAAAAGGATTGAATGTGAAATGAACCTGTATATTCCTACCCTCTGCTGGATATGAGGATGCACAGTTATGTTGTGTTAGTCAGTCGTGAGTATCAATATTATGTGTACATGTAGGGGTGTGTTTATGTGGGATAGGGGTGTGGACATACTCCTCTCCCCCTAGGCCCCGATTCCTCCTAAGAGGGGGGTGGGAACTTGGGTACAGTCCAGTTTCTCTGGAGCCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941891.1 False 1607 mRNA 0.52 8 63700749 63711702
XM_036941889.1 False 1609 mRNA 0.52 8 63700750 63711702
XM_036941890.1 False 1592 mRNA 0.52 8 63700750 63711702
TU1363689 False 1165 TUCP 0.54 7 63700771 63709450
TU1363671 False 1927 lncRNA 0.43 2 63711387 63714263
TU1363673 True 2003 lncRNA 0.44 3 63711387 63714263

Neighbor

gene id symbol gene type direction distance location
LOC110487418 LOC106606343 coding upstream 4998 63692380 ~ 63695751 (+)
LOC118936377 LOC106606343 coding upstream 8223 63686009 ~ 63692526 (+)
LOC110487417 LOC106606343 coding upstream 19731 63671998 ~ 63681018 (+)
LOC110487431 LOC106606352 coding upstream 32900 63651349 ~ 63667849 (+)
LOC110487154 LOC106606388 coding upstream 159571 63535019 ~ 63541178 (+)
LOC118936528 LOC106606344 coding downstream 21616 63733318 ~ 63741341 (+)
LOC110487460 LOC106606345 coding downstream 45699 63757401 ~ 63797734 (+)
LOC110487436 LOC106606384 coding downstream 102377 63814079 ~ 63821216 (+)
LOC110511852 LOC106601949 coding downstream 116227 63827929 ~ 63839336 (+)
LOC110487419 dpod1 coding downstream 154871 63866573 ~ 63903684 (+)
G1195178 NA non-coding upstream 55161 63645374 ~ 63645588 (+)
G1195175 NA non-coding upstream 61103 63639116 ~ 63639646 (+)
G1195166 NA non-coding upstream 74590 63625886 ~ 63626159 (+)
G1195164 NA non-coding upstream 78585 63621949 ~ 63622164 (+)
G1195221 NA non-coding downstream 31854 63743556 ~ 63746712 (+)
G1195224 NA non-coding downstream 36322 63748024 ~ 63755743 (+)
G1195190 NA non-coding downstream 86552 63798254 ~ 63798469 (+)
G1195240 NA non-coding downstream 106192 63817894 ~ 63818591 (+)
G1194741 LOC106606381 other upstream 596655 63103300 ~ 63104094 (+)
G1194739 NA other upstream 609407 63090303 ~ 63091342 (+)
G1194696 LOC106601958 other upstream 721618 62963609 ~ 62979131 (+)
LOC110485308 LOC106601924 other upstream 1098002 62569908 ~ 62605641 (+)
G1195223 NA other downstream 41246 63752948 ~ 63754685 (+)
G1195428 NA other downstream 607429 64319131 ~ 64332402 (+)
G1195442 NA other downstream 673895 64385597 ~ 64385993 (+)
G1195444 NA other downstream 679303 64391005 ~ 64391718 (+)
LOC110487456 LOC106593034 other upstream 1937 63700749 ~ 63714263 (+)

Expression

LOC110487456(LOC106593034) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
End of interactive chart.

LOC110487456(LOC106593034) Expression in each Bioproject

Bar chart with 21 bars.
LOC110487456(LOC106593034) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network