LOC110487436 (LOC106606384)


Basic Information

Item Value
gene id LOC110487436
gene name LOC106606384
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63814079 ~ 63821216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559374.2
TGGTGGCGGCAATACACCTTTTGGGGTTGTCGTCCTCCATGAaacccacagaagaagaagaatggcTTCCTCTGAAACGCATGATGATTCAACGCACAGCAATTAGCTTCGGACTCAACTAGAATGTTCTAGTACCGTTACATTCTTGTACAGTATTAAAGGGCAGCGAAATAAGAACCAACTTTAACATTGTGATACTCGGCGTTTTGAACAAACAGCACAGAGCATCATGGCAGAAGACCAACGCAACAGGAGACATCCCCAAAACCTCCAGGGTGTCCTTCGATTGGCTGTGGAGGCTGGCTCTGCTGCAGATGGACCCGCCCTCCCTGAACCCATGTCAGAGGAGAGGAAAGAATGGTTGAAAGGAGCTCTTGCGGAAGTGGCCAAAGGACAGAACAGCGAGGTGGAACAGATGAAGGAGTGTATGCGCGTTCTGCTGAGAGATGGAGggtgtgagagggggagagagggagaggaggaaggagaggatgaagagggggagacagaaggggCACTGGAGTTTCTCTCAGAGCTGTGTGAGAACCTAGACAATGCCAGAGaccTGATGACCCTGGGTGGGTTGGACCTGTGTATGTCGCAGTGCTTGAACCATCCTCAGGGCAGCGTGAGGTGGCGTGGTGCCCAGCTCATCGCCTCCTGTGCCCAGAACATGCCCCAAGTGCAGTGCCACTTACTCAGCAAGGGGGCGCTACCCAAACTGCTACAGCTGACTGACTCAGATCCCCACCCCACCGTTCGAGTGAAGGCCCTCTACGCTGTCTCCTgtcTGGTGCGGGAGCAGGAAGTAGGTCTCCGGGCCTTCCTCTCTCACGATGGCTTCTCTGTGCTGATGAGAGGCATGCAGTCTGACAACGAGAAACTGAGGACCAAGTCGTCTTTCTTACTCCTCAACCTGCTCACAGTCCACCCAGAGCATAAAGTTCTCTCCATGGGTATGGTGCAACAGCTGGTGTCTGTTCTACGCACGCCCCACTCCTCCTTCCACGAGCACGTGCTCGGCGCCCTCTGCTGCCTGGTGGAGGAGAGTCCTCTGGGTCTGAGGGACTGTCAGAGCCCTACCTTGGGGCTGGAGGAGATGCTCAACCAGCGGGCTGAAGATctgcaggggagagaggagtgtcAGGAAGAGTTGGAGTTCTGCAAGCGCTTGCGTTCTGCTTGTTTCTGCAGACGGCAACCTGACGACAGTGGAATGGATCGCTGAAATCCAACTGGTCCTCCACTTCTCCTGCAGTGCCGTCATTGGCTAGGAGACATAGGAGGACAttattt
>XM_021559373.2
GGTGGCGGCAATACACCTTTTGGGGTTGTCGTCCTCCATGAaacccacagaagaagaagaatggcTTCCTCTGAAACGCATGATGATTCAACGCACAGCAATTAGCTTCGGACTCAACTAGAATGTTCTAGTACCGTTACATTCTTGTACAGTATTAAAGGGCAGCGAAATAAGAACCAACTTTAACATTGTGATACTCGGCGTTTTGAACAAACAGAGCATCATGGCAGAAGACCAACGCAACAGGAGACATCCCCAAAACCTCCAGGGTGTCCTTCGATTGGCTGTGGAGGCTGGCTCTGCTGCAGATGGACCCGCCCTCCCTGAACCCATGTCAGAGGAGAGGAAAGAATGGTTGAAAGGAGCTCTTGCGGAAGTGGCCAAAGGACAGAACAGCGAGGTGGAACAGATGAAGGAGTGTATGCGCGTTCTGCTGAGAGATGGAGggtgtgagagggggagagagggagaggaggaaggagaggatgaagagggggagacagaaggggCACTGGAGTTTCTCTCAGAGCTGTGTGAGAACCTAGACAATGCCAGAGaccTGATGACCCTGGGTGGGTTGGACCTGTGTATGTCGCAGTGCTTGAACCATCCTCAGGGCAGCGTGAGGTGGCGTGGTGCCCAGCTCATCGCCTCCTGTGCCCAGAACATGCCCCAAGTGCAGTGCCACTTACTCAGCAAGGGGGCGCTACCCAAACTGCTACAGCTGACTGACTCAGATCCCCACCCCACCGTTCGAGTGAAGGCCCTCTACGCTGTCTCCTgtcTGGTGCGGGAGCAGGAAGTAGGTCTCCGGGCCTTCCTCTCTCACGATGGCTTCTCTGTGCTGATGAGAGGCATGCAGTCTGACAACGAGAAACTGAGGACCAAGTCGTCTTTCTTACTCCTCAACCTGCTCACAGTCCACCCAGAGCATAAAGataCAGTTCTCTCCATGGGTATGGTGCAACAGCTGGTGTCTGTTCTACGCACGCCCCACTCCTCCTTCCACGAGCACGTGCTCGGCGCCCTCTGCTGCCTGGTGGAGGAGAGTCCTCTGGGTCTGAGGGACTGTCAGAGCCCTACCTTGGGGCTGGAGGAGATGCTCAACCAGCGGGCTGAAGATctgcaggggagagaggagtgtcAGGAAGAGTTGGAGTTCTGCAAGCGCTTGCGTTCTGCTTGTTTCTGCAGACGGCAACCTGACGACAGTGGAATGGATCGCTGAAATCCAACTGGTCCTCCACTTCTCCTGCAGTGCCGTCATTGGCTAGGAGACATAGGAGGACAttattt
>XM_021559372.2
GGTGGCGGCAATACACCTTTTGGGGTTGTCGTCCTCCATGAaacccacagaagaagaagaatggcTTCCTCTGAAACGCATGATGATTCAACGCACAGCAATTAGCTTCGGACTCAACTAGAATGTTCTAGTACCGTTACATTCTTGTACAGTATTAAAGGGCAGCGAAATAAGAACCAACTTTAACATTGTGATACTCGGCGTTTTGAACAAACAGCACAGAGCATCATGGCAGAAGACCAACGCAACAGGAGACATCCCCAAAACCTCCAGGGTGTCCTTCGATTGGCTGTGGAGGCTGGCTCTGCTGCAGATGGACCCGCCCTCCCTGAACCCATGTCAGAGGAGAGGAAAGAATGGTTGAAAGGAGCTCTTGCGGAAGTGGCCAAAGGACAGAACAGCGAGGTGGAACAGATGAAGGAGTGTATGCGCGTTCTGCTGAGAGATGGAGggtgtgagagggggagagagggagaggaggaaggagaggatgaagagggggagacagaaggggCACTGGAGTTTCTCTCAGAGCTGTGTGAGAACCTAGACAATGCCAGAGaccTGATGACCCTGGGTGGGTTGGACCTGTGTATGTCGCAGTGCTTGAACCATCCTCAGGGCAGCGTGAGGTGGCGTGGTGCCCAGCTCATCGCCTCCTGTGCCCAGAACATGCCCCAAGTGCAGTGCCACTTACTCAGCAAGGGGGCGCTACCCAAACTGCTACAGCTGACTGACTCAGATCCCCACCCCACCGTTCGAGTGAAGGCCCTCTACGCTGTCTCCTgtcTGGTGCGGGAGCAGGAAGTAGGTCTCCGGGCCTTCCTCTCTCACGATGGCTTCTCTGTGCTGATGAGAGGCATGCAGTCTGACAACGAGAAACTGAGGACCAAGTCGTCTTTCTTACTCCTCAACCTGCTCACAGTCCACCCAGAGCATAAAGataCAGTTCTCTCCATGGGTATGGTGCAACAGCTGGTGTCTGTTCTACGCACGCCCCACTCCTCCTTCCACGAGCACGTGCTCGGCGCCCTCTGCTGCCTGGTGGAGGAGAGTCCTCTGGGTCTGAGGGACTGTCAGAGCCCTACCTTGGGGCTGGAGGAGATGCTCAACCAGCGGGCTGAAGATctgcaggggagagaggagtgtcAGGAAGAGTTGGAGTTCTGCAAGCGCTTGCGTTCTGCTTGTTTCTGCAGACGGCAACCTGACGACAGTGGAATGGATCGCTGAAATCCAACTGGTCCTCCACTTCTCCTGCAGTGCCGTCATTGGCTAGGAGACATAGGAGGACAttattttaaattaaattaactccttgaggaaaacctgctgaTGTCGTTGTCCATCTAGACCCATGTTACAGGGTGGCTGGATCTAAGAGTGTAGCAGGCTTTAGAGAGCAGAGGGTGCTTCACTAAACACTGTCACCAGGCGACGCAGATAAACTTCTATCTCTTGTGTTCAGTCACTTCTACCATGTCCAGTCTATATATCATTATGATCTACACCTGACTACTTCCTGCTGACCTCTTGACCTCTTGCAAAAGAGGTTTCTAACTTCTAAGGTGTTTTCCTGGTTGAATAAAGATACAATATTTTATTTTCTGATAGTACCGTAAGTCATTTCTGGACATTTCTTCGGGTTATCTGATCATAGCTTTGTGATGTACTCCCCCCTGTTGCTGTTAAGCTGCTGAAGAGAACAGATTAGAGAAGCCTTAACCTTTGGATTCTGACCCAACAATCCCTCAGATTCCACACATAAAATATCAGATGTCACATTTAGTGATGATGCGATTTCACAGCCCCGTCACCATTTATATATCTGGCCCAGTGTGACGTTACTTGGTAATAATTGGGATCCTCTTGTATTTGTTAAAATGATTTACCAAGTGACAACTAGTTATTGGGTAACACTAAGTAATATACACTGTTAAACTACATAATAGTTCTTGTGTTTCTGAATAAATAGCAGGTAATTAGGCTGTAAAATAAAGCGTTACCCATTTAGCAGCTTTCAGCTTCATTAGTCAGATGTTTTATTAGAATCCATTTTGATCGAGTTTCACTACCCATAAGGCATTTCTGTTGGCTTCTTGTGTTTGGCTTTTTATGACTGTCTTTCATTCAGAATATCCACCGTTTGTCGATGTTTTGTTGAGACGTTTCTGTCTATAAACATAATGGGTGACTTTTGCAGAGCTCTTACGTCTGAAATAACATGAAATATGTAACACACCTTTATTTTTCATCCCCATTTCATCATGAATaaattaacattttattttttcatAA

Function

NR:

description
hsp70-binding protein 1 isoform X1

GO: NA

KEGG:

id description
K09562 HSPBP1, FES1; hsp70-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559374.2 False 1296 mRNA 0.55 8 63814079 63820219
XM_021559373.2 False 1296 mRNA 0.55 8 63814080 63820219
XM_021559372.2 True 2298 mRNA 0.47 8 63814080 63821216
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110487460 LOC106606345 coding upstream 16345 63757401 ~ 63797734 (+)
LOC118936528 LOC106606344 coding upstream 72738 63733318 ~ 63741341 (+)
LOC110487456 LOC106593034 coding upstream 102377 63700749 ~ 63714263 (+)
LOC110487418 LOC106606343 coding upstream 118328 63692380 ~ 63695751 (+)
LOC118936377 LOC106606343 coding upstream 121553 63686009 ~ 63692526 (+)
LOC110511852 LOC106601949 coding downstream 6713 63827929 ~ 63839336 (+)
LOC110487419 dpod1 coding downstream 45357 63866573 ~ 63903684 (+)
LOC110487028 LOC106606237 coding downstream 135150 63956366 ~ 63960921 (+)
LOC118938351 NA coding downstream 223458 64044674 ~ 64047118 (+)
LOC110487476 LOC106601943 coding downstream 262142 64083358 ~ 64109709 (+)
G1195190 NA non-coding upstream 15610 63798254 ~ 63798469 (+)
G1195224 NA non-coding upstream 58336 63748024 ~ 63755743 (+)
G1195221 NA non-coding upstream 67367 63743556 ~ 63746712 (+)
G1195245 NA non-coding downstream 5314 63826530 ~ 63826870 (+)
G1195247 NA non-coding downstream 27812 63849028 ~ 63850169 (+)
G1195252 NA non-coding downstream 42319 63863535 ~ 63863840 (+)
G1195253 NA non-coding downstream 44050 63865266 ~ 63865535 (+)
G1195223 NA other upstream 59394 63752948 ~ 63754685 (+)
G1194741 LOC106606381 other upstream 709985 63103300 ~ 63104094 (+)
G1194739 NA other upstream 722737 63090303 ~ 63091342 (+)
G1195428 NA other downstream 497915 64319131 ~ 64332402 (+)
G1195442 NA other downstream 564381 64385597 ~ 64385993 (+)
G1195444 NA other downstream 569789 64391005 ~ 64391718 (+)
G1196177 NA other downstream 1145362 64966578 ~ 64966866 (+)

Expression

LOC110487436(LOC106606384) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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LOC110487436(LOC106606384) Expression in each Bioproject

Bar chart with 21 bars.
LOC110487436(LOC106606384) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network