LOC110511879 (LOC106606293)


Basic Information

Item Value
gene id LOC110511879
gene name LOC106606293
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 64653378 ~ 64655487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941941.1
ATGTACAATTCTTCCTGTGGTCACCAGGACAGAGCTAGTCCGTTCCCCTCCACCCTGCCGGAGTCCACTGGATACAACTCTCCCGGTAGAGCCTTACTGCTGGGTCTGAAGAGGGTGTCTGTGTGGCTGGTCGACTGCAGGAAAACAGCAGGgcagagtggaactgtgagagaagGACACGAGGAGGGAGATTTGATTTCATCAAGGGACACCCCTAACCGCCGTTCTCACAGTGGGAGGGGCTTATCATCTGGGGCGCTTCAACCATATCATGTTGCTGACAagacagagaagagtctctccagatcagaacgtctcaagaaacaccagcagagacGTATAGGAAAGAAACCTCACCACTGCttctctgactgtgggaagagttttacaaGCCAGAGTGGCTTCATTATTCACACCGTAGTGAAACCGTACTGCTGCTCACAGTGTGGGAAGTGTTTCGCTGCTTCTAACACCTTCAAATCTCATCTGAGAATTCATAAAGGGGAGAGGCCTTACCCATGCCTTGATTGTGGGAAAAGATTTTCTTATTTGGGAGCCTTAAACATACACctgcgaacacacacaggagagaagccttatagctgtgatcagtgtggaaagagcttcAGTCAATCTGGGACCTTAAATTCACACCAGCGAACAcatactggagagaaaccttataactGTGATCGGTGTGGAAAGAGATTTGCTCAGTCAAGAGAGCTGACTAGACACctgcgaacacacacaggagagaagccttatagttgtgatcagtgtgggaagagctttgctctATCAAAAGCCCTAACTATACACCAGCgtatacacactggagagaagccttatagctgtggtcagtgtgggaaaagcttcaatcAGTCTGGCAACCTGACAACACACAAGCTAACACACACTGGagtgaagccttatagctgtggtcagtgTGGGATGAACTTTGCTCGAGCTTCCACCCTGAATAGACACaagcgaacacacactggagagaaaccttatagctgtgatcagtgtgggaagagctttgctctATCAGATAAACGaactatacaccagagaacacacactggagagaagccttattgcTGTTATCAGTGTGGAAAGGGCTTTGCTGTAGCTTCCACCCTGATTAGACACTATCGaaaacacactggagagaagccttatagctgtgatcagtgtgggaaaaGCTTTGCTGTAGCTTCCACCCTGAAtacacaccagcgaacacacactggggagaagccttatagctgtgatcaatgtggtaAAAGCTTTGCTGTAGCTTACAACATGATTAGACACCACcgaacacacactgcagagaaaCATTAGATAGATATGCAGTACAGGTAAGCCCTGTTGATAGCTGCCAACAAGCCATGTTGGGTGTGTGATCAGTGGTTGGCTAGCTAGGGGCTTCTAAAAATGTACGTTAGCTAGAAAGCCACTGACTAACGTTAGTTGTGTGTAACGCACGTTACCTTCCTTACAGGTAAAAAGAAAACCATCATAGGACAGCATAATGACTGACATTTCATGATTGACAAGTCCTTTgtgagctagccagctagataacGTTAACTCGCCGTTCGTGTAGTCAGACTTGCTAACTTTAGCCCAGCACCAGGGCaacagtagttagttagctagcacgTCACCACGTAAATTTGACTACACGAATGTTGAGCTAATGT

Function

NR:

description
PREDICTED: zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941941.1 True 1718 mRNA 0.47 2 64653378 64655487
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110513424 LOC106606290 coding downstream 13333 64627174 ~ 64640045 (-)
LOC110487475 NA coding downstream 28638 64614816 ~ 64624740 (-)
LOC110485289 NA coding downstream 41790 64601975 ~ 64611588 (-)
LOC110513427 NA coding downstream 53356 64582089 ~ 64600022 (-)
LOC110487483 LOC106606297 coding downstream 66949 64573294 ~ 64586429 (-)
LOC110486630 LOC106601477 coding upstream 12105 64667592 ~ 64675033 (-)
LOC110487480 LOC106606286 coding upstream 143169 64798656 ~ 64945651 (-)
LOC118938356 NA coding upstream 296056 64951543 ~ 64954224 (-)
LOC110487107 LOC106606311 coding upstream 297167 64952654 ~ 64963823 (-)
LOC118936529 LOC105012854 coding upstream 313689 64969176 ~ 65045461 (-)
G1196067 NA non-coding downstream 5122 64647751 ~ 64648256 (-)
LOC110510722 LOC106606296 non-coding downstream 8729 64641877 ~ 64662041 (-)
G1196056 NA non-coding downstream 31111 64621635 ~ 64622267 (-)
G1196021 LOC106606290 non-coding downstream 37409 64594208 ~ 64615969 (-)
G1196025 NA non-coding downstream 51970 64560247 ~ 64601408 (-)
G1196085 NA non-coding upstream 52866 64708353 ~ 64728928 (-)
G1196016 NA non-coding upstream 95163 64750650 ~ 64771549 (-)
G1196108 NA non-coding upstream 127659 64783146 ~ 64785072 (-)
G1196112 NA non-coding upstream 137341 64792828 ~ 64793587 (-)
G1195997 NA other downstream 176006 64476970 ~ 64477372 (-)
LOC110487482 LOC106606373 other downstream 305971 64334669 ~ 64362841 (-)
G1195624 NA other downstream 707614 63945076 ~ 63945764 (-)
LOC110485277 LOC106602060 other downstream 1147854 63495359 ~ 63509387 (-)
G1194933 NA other downstream 1515656 63137040 ~ 63137722 (-)
G1196113 NA other upstream 139161 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 296303 64951790 ~ 64963785 (-)
G1196208 NA other upstream 301791 64957278 ~ 64961176 (-)
G1196409 NA other upstream 597792 65253279 ~ 65254078 (-)
G1196536 emp2 other upstream 813960 65446633 ~ 65472652 (-)

Expression

LOC110511879(LOC106606293) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110511879(LOC106606293) Expression in each Bioproject

Bar chart with 21 bars.
LOC110511879(LOC106606293) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network