Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110487480 |
| gene name | LOC106606286 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 64798656 ~ 64945651 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036941954.1 | False | 5524 | mRNA | 0.47 | 16 | 64798656 | 64945650 |
| XM_036941951.1 | False | 5482 | mRNA | 0.47 | 15 | 64798656 | 64945651 |
| XM_036941952.1 | False | 5442 | mRNA | 0.47 | 16 | 64798656 | 64945651 |
| XM_036941956.1 | False | 5477 | mRNA | 0.47 | 15 | 64798656 | 64945651 |
| XR_005035649.1 | False | 2004 | mRNA | 0.57 | 16 | 64802172 | 64945651 |
| XM_036941950.1 | False | 3660 | mRNA | 0.48 | 15 | 64804203 | 64945651 |
| XM_036941957.1 | False | 1977 | mRNA | 0.58 | 15 | 64805881 | 64945651 |
| XM_036941953.1 | False | 2020 | mRNA | 0.58 | 15 | 64806215 | 64945650 |
| XM_036941955.1 | False | 2000 | mRNA | 0.57 | 15 | 64806231 | 64945651 |
| TU1364680 | False | 399 | lncRNA | 0.40 | 1 | 64798658 | 64799056 |
| TU1364681 | False | 240 | lncRNA | 0.37 | 1 | 64798658 | 64798897 |
| TU1364684 | False | 847 | lncRNA | 0.36 | 1 | 64799129 | 64799975 |
| TU1364682 | True | 846 | lncRNA | 0.38 | 1 | 64800092 | 64800937 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486630 | LOC106601477 | coding | downstream | 123623 | 64667592 ~ 64675033 (-) |
| LOC110510722 | LOC106606296 | coding | downstream | 136615 | 64641877 ~ 64662041 (-) |
| LOC110511879 | LOC106606293 | coding | downstream | 143169 | 64653378 ~ 64655487 (-) |
| LOC110513424 | LOC106606290 | coding | downstream | 158611 | 64627174 ~ 64640045 (-) |
| LOC110487475 | NA | coding | downstream | 173916 | 64614816 ~ 64624740 (-) |
| LOC118938356 | NA | coding | upstream | 5892 | 64951543 ~ 64954224 (-) |
| LOC110487107 | LOC106606311 | coding | upstream | 7003 | 64952654 ~ 64963823 (-) |
| LOC118936529 | LOC105012854 | coding | upstream | 23525 | 64969176 ~ 65045461 (-) |
| LOC118938357 | LOC106595583 | coding | upstream | 542297 | 65487948 ~ 65503404 (-) |
| LOC118938101 | LOC106603827 | coding | upstream | 1274414 | 66220065 ~ 66267701 (-) |
| G1196112 | NA | non-coding | downstream | 5069 | 64792828 ~ 64793587 (-) |
| G1196108 | NA | non-coding | downstream | 13584 | 64783146 ~ 64785072 (-) |
| G1196016 | NA | non-coding | downstream | 27107 | 64750650 ~ 64771549 (-) |
| G1196085 | NA | non-coding | downstream | 69728 | 64708353 ~ 64728928 (-) |
| G1196024 | LOC106601477 | non-coding | downstream | 130230 | 64627422 ~ 64668426 (-) |
| G1196206 | NA | non-coding | upstream | 184 | 64945835 ~ 64946577 (-) |
| G1196208 | NA | non-coding | upstream | 11627 | 64957278 ~ 64961176 (-) |
| G1196209 | NA | non-coding | upstream | 14438 | 64960089 ~ 64961357 (-) |
| G1196210 | NA | non-coding | upstream | 21000 | 64966651 ~ 64966949 (-) |
| G1196214 | NA | non-coding | upstream | 22235 | 64967886 ~ 64968303 (-) |
| G1196113 | NA | other | downstream | 3585 | 64794648 ~ 64795071 (-) |
| G1195997 | NA | other | downstream | 321284 | 64476970 ~ 64477372 (-) |
| LOC110487482 | LOC106606373 | other | downstream | 451249 | 64334669 ~ 64362841 (-) |
| G1195624 | NA | other | downstream | 852892 | 63945076 ~ 63945764 (-) |
| LOC110485277 | LOC106602060 | other | downstream | 1293132 | 63495359 ~ 63509387 (-) |
| G1196205 | LOC106606311 | other | upstream | 6139 | 64951790 ~ 64963785 (-) |
| G1196409 | NA | other | upstream | 307628 | 65253279 ~ 65254078 (-) |
| G1196536 | emp2 | other | upstream | 523796 | 65446633 ~ 65472652 (-) |
| G1196067 | NA | non-coding | downstream | 150402 | 64647751 ~ 64648256 (-) |
| G1196119 | NA | non-coding | upstream | 27761 | 64828698 ~ 64828965 (-) |
| G1196123 | NA | non-coding | upstream | 45005 | 64845942 ~ 64846418 (-) |
| G1196138 | NA | non-coding | upstream | 80256 | 64881193 ~ 64882900 (-) |
| G1196147 | NA | non-coding | upstream | 104694 | 64905631 ~ 64908686 (-) |
| G1196149 | NA | non-coding | upstream | 108724 | 64909661 ~ 64912439 (-) |
