LOC110487107 (LOC106606311)


Basic Information

Item Value
gene id LOC110487107
gene name LOC106606311
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 64952654 ~ 64963823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941964.1
TGGACCCGTCCCGGATGCCGTACTAAACCCGGACAGGATGTGGCTTTGAATTATGTTACCAGAATGTGTTAGCTAAGGACAACGACTTGTAAGCATAATGACAAAAACATGTTCCCCCAAGAAAAAATAGCTTTTGTATCAAAGTAGAGGATCGTGGCGGGGATGTGGCTACGTTATGGGAAACGTTTTCGGGAGAAAGAGTCGCCCTTCTCGAGTTACAGAACAAGACCGAGCGATTCTGCAACTGAAACAGCAGAGAGATAAACTGAAGCACTACCAGAAGAGAGTCACCCTgcagctggagaaggagaggagtctGGCCAAGCAGCTGCTGAAGGatggaaagaaagaGAAGGCACTGGTTCTTCTCAAGAAGAAGCGTTATCAGGATCAACTGCTAGACAAGACTGAGAACCAGATATCAAACCTGGAACGCATGGTTCAAGACATTGAGTTTGTCCAGATCGAGATGAAAGTCATTGAGGGGCTAAAGGTTGGAAATGACTGTCTGAAGAGTATGCATGAGGCCATGTCACTAGAGGACGTGGAGAGGATCATGGATGAGACCCAGGATGCTATAGAATACCAGAGGCAAATAGATGAGCTGCTGTCAGGCTCCCTGACTCAGGAGGATGAGGATGCTGTGCTATCTGAGCTGGAGGCTATCACTCAGGGAGAAGATGTAGAACTTCCAGAGGTCCCCACTGAGCCTCTACCAGAGGTCCCAGAACCAGCTGAGACCGAGCCAGAGAGAAGACCAGCAAGGAAcaaggagaacagagagatgctGGCAGCGTAGAGACAAGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGAAGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGAAGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGTTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATACCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCAGCTGTGGATGGATCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGAAGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATATCAACAGTAGCTATGGATGGAGCTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATACCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCAGCTGTGGATGGATCTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAGCTGACTCAATAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGTTAGTCCAACtgactcaacaacaacaacagtagcaacagtagctaTGGATGGAGCTAGTCCAACTGACTCAATaacaacaacagtagcaacagtagctaTGGATGGAGCTAGTCTAACTGACTCAATaacaacaacagtagcaacagtagctaTGGATGGAGCTAGTCCAACTGACTCAATAAcaacaacagtagcagcagtagctatGGATGGAGCTAGTCCAACTaactcaacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACtcaataacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACtcaataacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACtcaataacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACTCAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCAGCTGTGGATGGATCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGAAGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATATCAACAGTAGCTATGGATGGAGCTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATACCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAGCTGACTCAATAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGTTAGTCCAACtgactcaacaacaacaacagtagcaacagtagctaTGGATGGAGCTAGTCCAACTGACTCAATaacaacaacagtagcaacagtagctaTGGATGGAGCTAGTCTAACTGACTC
>XM_036941963.1
AAATGGACCCGTCCCGGATGCCGTACTAAACCCGGACAGGATGTGGCTTTGAATTATGTTACCAGAATGTGTTAGCTAAGGACAACGACTTGTAAGCATAATGACAAAAACATGTTCCCCCAAGAAAAAATAGCTTTTGTATCAAAGTAGAGGATCGTGGCGGGGATGTGGCTACGTTATGGGAAACGTTTTCGGGAGAAAGAGTCGCCCTTCTCGAGTTACAGAACAAGACCGAGCGATTCTGCAACTGAAACAGCAGAGAGATAAACTGAAGCACTACCAGAAGAGAGTCACCCTgcagctggagaaggagaggagtctGGCCAAGCAGCTGCTGAAGGatggaaagaaagaGAAGGCACTGGTTCTTCTCAAGAAGAAGCGTTATCAGGATCAACTGCTAGACAAGACTGAGAACCAGATATCAAACCTGGAACGCATGGTTCAAGACATTGAGTTTGTCCAGATCGAGATGAAAGTCATTGAGGGGCTAAAGGTTGGAAATGACTGTCTGAAGAGTATGCATGAGGCCATGTCACTAGAGGACGTGGAGAGGATCATGGATGAGACCCAGGATGCTATAGAATACCAGAGGCAAATAGATGAGCTGCTGTCAGGCTCCCTGACTCAGGAGGATGAGGATGCTGTGCTATCTGAGCTGGAGGCTATCACTCAGGGAGAAGATGTAGAACTTCCAGAGGTCCCCACTGAGCCTCTACCAGAGGTCCCAGAACCAGCTGAGACCGAGCCAGGTAACGAGAGAAGACCAGCAAGGAAcaaggagaacagagagatgctGGCAGCGTAGAGACAAGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGAAGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGAAGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGTTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATACCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCAGCTGTGGATGGATCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGAAGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATATCAACAGTAGCTATGGATGGAGCTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATACCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCAGCTGTGGATGGATCTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAGCTGACTCAATAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGTTAGTCCAACtgactcaacaacaacaacagtagcaacagtagctaTGGATGGAGCTAGTCCAACTGACTCAATaacaacaacagtagcaacagtagctaTGGATGGAGCTAGTCTAACTGACTCAATaacaacaacagtagcaacagtagctaTGGATGGAGCTAGTCCAACTGACTCAATAAcaacaacagtagcagcagtagctatGGATGGAGCTAGTCCAACTaactcaacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACtcaataacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACtcaataacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACtcaataacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACTCAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCAGCTGTGGATGGATCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGAAGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATATCAACAGTAGCTATGGATGGAGCTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATACCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAGCTGACTCAATAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGTTAGTCCAACtgactcaacaacaacaacagtagcaacagtagctaTGGATGGAGCTAGTCCAACTGACTCAATaacaacaacagtagcaacagtagctaTGGATGGAGCTAGTCTAACTGACTC

Function

NR:

description
PREDICTED: charged multivesicular body protein 6-like isoform X1

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12195 CHMP6, VPS20; charged multivesicular body protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941964.1 False 3456 mRNA 0.45 8 64952654 64963820
XM_036941963.1 True 3465 mRNA 0.45 8 64952654 64963823
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Neighbor

gene id symbol gene type direction distance location
LOC110487480 LOC106606286 coding downstream 7003 64798656 ~ 64945651 (-)
LOC110486630 LOC106601477 coding downstream 277621 64667592 ~ 64675033 (-)
LOC110510722 LOC106606296 coding downstream 290613 64641877 ~ 64662041 (-)
LOC110511879 LOC106606293 coding downstream 297167 64653378 ~ 64655487 (-)
LOC110513424 LOC106606290 coding downstream 312609 64627174 ~ 64640045 (-)
LOC118936529 LOC105012854 coding upstream 5353 64969176 ~ 65045461 (-)
LOC118938357 LOC106595583 coding upstream 524125 65487948 ~ 65503404 (-)
LOC118938101 LOC106603827 coding upstream 1256242 66220065 ~ 66267701 (-)
LOC118938102 LOC106603753 coding upstream 1261327 66225150 ~ 66385923 (-)
LOC118938480 NA coding upstream 1459774 66423597 ~ 66424229 (-)
G1196206 NA non-coding downstream 6077 64945835 ~ 64946577 (-)
G1196157 NA non-coding downstream 21179 64931175 ~ 64931475 (-)
G1196150 NA non-coding downstream 38259 64914019 ~ 64914395 (-)
G1196149 NA non-coding downstream 40215 64909661 ~ 64912439 (-)
G1196147 NA non-coding downstream 43968 64905631 ~ 64908686 (-)
G1196210 NA non-coding upstream 2828 64966651 ~ 64966949 (-)
G1196214 NA non-coding upstream 4063 64967886 ~ 64968303 (-)
G1196224 NA non-coding upstream 31573 64995396 ~ 64995661 (-)
G1196229 NA non-coding upstream 47258 65011081 ~ 65011561 (-)
G1196113 NA other downstream 157583 64794648 ~ 64795071 (-)
G1195997 NA other downstream 475282 64476970 ~ 64477372 (-)
LOC110487482 LOC106606373 other downstream 605247 64334669 ~ 64362841 (-)
G1195624 NA other downstream 1006890 63945076 ~ 63945764 (-)
LOC110485277 LOC106602060 other downstream 1447130 63495359 ~ 63509387 (-)
G1196409 NA other upstream 289456 65253279 ~ 65254078 (-)
G1196536 emp2 other upstream 505624 65446633 ~ 65472652 (-)
G1196797 NA other upstream 826900 65790723 ~ 65795435 (-)
G1196818 NA other upstream 893995 65857818 ~ 65859372 (-)

Expression

LOC110487107(LOC106606311) Expression in all Baseline Samples

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LOC110487107(LOC106606311) Expression in each Bioproject

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LOC110487107(LOC106606311) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network