LOC118938476 (LOC106603753)


Basic Information

Item Value
gene id LOC118938476
gene name LOC106603753
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 66434389 ~ 66435647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035743.1
GTTGGTTTTACATAATGATAAAAAATGAATATTACTAATGTAACCCACTGTAAAGACTGGGTTTAGTTGATTGTGTTGCACTGCTCATGTCCGCGTTCTggaactgtccgcgtccccgtacagaactgtccgcgtccccgtacagaactgtccgcgtacaaaactgtccgcgtccccgtacGGTGTGGCGCCAAGCCGGTTACGCGCAGAGTGGATTGAGGTGATCTTGGGGAATAACGGCGGAGTTTGTTACAGTGTTGAGACACCGAAGTTTACTGTTCAATTTGCTTTTTTCTTTACGGTCAGGGACAGTATGAGTGTAGTCAGATCCTTTTCACTCTCTATCCTTGTTTCAATTTGTGTTTCACCGGATTCGTCATCGAAACGAGGGACAGACGAACGACCTGCTAACTAACCaagctagtcggtacagctcgtccaatcaagcaggagagaccagcctccactgttcccagctgtgtgtccatgaagagtgaccGGTCTATGGATCTACCTATATTCTTTAGAGAGGGAGACTTTTCTACTGAACAAAGAAACCAACAGGGGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGAGTCATCAAACAGACCTGGCCTCCATATTCAGTATGCTTGAAGAGAAAATTATGACATTTGTGAAGAACgagatgaagatgttcaagagga

Function

NR:

description
uncharacterized protein LOC110515953, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035743.1 True 697 mRNA 0.46 4 66434389 66435647
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118938480 NA coding downstream 10160 66423597 ~ 66424229 (-)
LOC118938102 LOC106603753 coding downstream 48466 66225150 ~ 66385923 (-)
LOC118938101 LOC106603827 coding downstream 211483 66220065 ~ 66267701 (-)
LOC118938357 LOC106595583 coding downstream 930997 65487948 ~ 65503404 (-)
LOC118936529 LOC105012854 coding downstream 1388928 64969176 ~ 65045461 (-)
LOC110519882 LOC106603827 coding upstream 241684 66677331 ~ 66679483 (-)
LOC118938475 LOC106603827 coding upstream 316145 66751792 ~ 66775949 (-)
LOC110513226 LOC106606280 coding upstream 351799 66787446 ~ 66789545 (-)
LOC118938487 LOC106581592 coding upstream 561892 66997539 ~ 67015258 (-)
LOC118938482 LOC106603827 coding upstream 729120 67164767 ~ 67166137 (-)
G1198044 NA non-coding downstream 3126 66430381 ~ 66431263 (-)
G1197896 LOC106577477 non-coding downstream 5078 66428683 ~ 66429311 (-)
G1198037 NA non-coding downstream 22922 66409301 ~ 66411467 (-)
G1198035 NA non-coding downstream 33313 66400340 ~ 66401076 (-)
G1198034 NA non-coding downstream 35933 66393457 ~ 66398456 (-)
G1198045 NA non-coding upstream 2318 66437965 ~ 66438844 (-)
G1197992 NA non-coding upstream 11116 66446763 ~ 66447840 (-)
G1198052 NA non-coding upstream 21442 66457089 ~ 66510561 (-)
G1198053 NA non-coding upstream 23517 66459164 ~ 66461316 (-)
G1198057 NA non-coding upstream 31301 66466948 ~ 66551423 (-)
G1197903 LOC106603827 other downstream 60238 66368056 ~ 66374151 (-)
G1196890 NA other downstream 381322 66052650 ~ 66053067 (-)
G1196805 NA other downstream 548784 65880226 ~ 65920222 (-)
G1196818 NA other downstream 575017 65857818 ~ 65859372 (-)
G1196797 NA other downstream 638954 65790723 ~ 65795435 (-)
G1198140 NA other upstream 358176 66793823 ~ 66852622 (-)
G1198179 NA other upstream 494842 66930489 ~ 66936294 (-)
G1198220 NA other upstream 655096 67090743 ~ 67092643 (-)
LOC110512204 LOC106592354 other upstream 736092 67167944 ~ 67175825 (-)

Expression

LOC118938476(LOC106603753) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC118938476(LOC106603753) Expression in each Bioproject

Bar chart with 21 bars.
LOC118938476(LOC106603753) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network