LOC110487469 (LOC106581592)


Basic Information

Item Value
gene id LOC110487469
gene name LOC106581592
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 68358050 ~ 68493827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559401.2
cTTGCCTCTGAAATgggtctctctggggagagagaggaagggggccTTGCCTCTGAAATgggtctctctggggagagagaggaggggggccctgCTGAAATGGGTCTCTCTGGGGAACATGACACCAAAGCTAAGAGCCCAATcaagcaggagagaccagcctcccctgtacccagctgtgtgtccatgaagagtgaccAGTCTATGGAACTACCTATAGAGTTTAGAGAGGGAGACTTTTCTACTGAACAAAGAAACCAACAGGAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGAGTCATCAAACAGACCTGGCCTCTATATTCAATttgcttGAAGAGAATATTATCACATTTGTGAAGAACGAGCTGAAGATGTTAAAGAGGATTCTGAGTCCAGAACTCCCACAAGGCTTTGAGAGTCAGAAGCAAGATAAGGAAGTGGTGGATGCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctctgaagatcacactgcacgtcctgaggaaaatgaaccagaaggagcttgctgacacactggagaaaaATGAGCTTGCTGTGATTTGCCAACGTGAACTCAAATCTAATCTAAAGAAGACGTTTCAATGTGTATTTGAGGGGATCGCTAAACAaggaaacccaacacttctcaataagatctacacagagctctacatcacagagggtggaacaggagaggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaacaAGCAAGACCAGAGACTGCAATCAAATGTAACGACATCTTCAAACCCTTAAGTGGACAAGATAAACTtatcagaactgtgctgacaaagggagtcgctggcattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcagGATGTCCAATTTGTATTTTCATTGCCTTTTCGTGAGCTGAATTTGATGAAAAGGGAAAAACACACTTTGATTGAACTTCTCAATCACTTCTCAATGGAAACAAAAGAATCAAGAATCTCCAACTATGACAAGTATaaagttctgttcatctttgatggtctggatgagtgccgactgcccctagacttccagaagaacaagatctgttgtgacgtcacagagtcaacctcagtggatgttctgctgacaaacctcatcaagggaaatctgcttccctctgctctcctctggataactACCCGACCTGCAGCAGCCAATCAGATCCCTTCAGAgtgtgttgaccaggtgacagaggtacgagggttcaatgacccacagaaggaggagtacttcaggaagagattcagtgatgatgaggacctggccagcagaatcatctcacacataaagacatcaaggagcctccacatcatgtgccacattccagtcttctgttggatttcTGCAACAGTCCTTGAAGACATACTGAAAcataagagagaagagatgcccaagactctgactgagatgtacaCACACCTTGTGGTGTTTCACACCAAACAGAAGAATGAGAAGTATCTTGGGAAAGAAGAGACAGGTCCAGACTGGAATAAAGAGAGCATTCTGTCACTGGGAAAACTGGCTTTTCAACAGCTTCTGAATCAcaatctgattttctatgaagaagacctgaaagaggctggcattgatgtcaatgaagccgcagtgtactcaggattgtgcacacaactctttaaagaggaatgtgggctgtaccaggacaaggtgtactgcttcgagcatctgagcattcaggagtttctggctgctgtatatgTGTTCCTTTCATTCAGCAACAACAATGAGAATCTAATGGCCGAACTGCAATCAACATCTAGTAACGATTGTCTACTGAAGCCAGAAGTTACTGTCTACAAGAGCGCTGTGGATAAAGCCTTACAAAATGAGACGGGAAACCTGGACcttttcctccgcttccttctgggcctctcactggagtccaatcagaagcAATTAGGAGGTCTACTGACAAAGACAGGAAGCAGCTCACAGAGCCATGAAGAAACAGTCAAGTACATCAAGGAGAAGATCAGGGAGAATCCCTCTCCAGAGAGGTgcatcaatctgttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaAGATACCTGAGCTCAGGAAGTCTCTCAGAAGCCAAACTCTCACCTTCACAGTTGTCagctctggtctttgtgttgctgacttcagAAAAGGAGCTGGATGTATTTGACCTGAGgaaatactccagatcagaggaagatCTTCTGAGGCTGCTGCCAGTGGTCAAAGCCTCCAGAGCTGCTCTgctgtcaggctgtggagTCACAGAGAAATGCTGTGATTCTCTGGTCTCTGCTCTCATCTCAAACCTCTCACACCTGAGGGAGCTGGATttgagtaacaatgacctgaaggattcaggagtgaagctgctctctgctggactggggaatccccactgtaaactggagattctgaggctgtcacGCTGTcaagtcacagaggaaggctgtgcttctctggtctcagctctgaggtcaaacccctcacacctgagagagctggacctgagctacaatcacccaggagactcaggagtcagactgctctctgctAGACTGGAGGATCCAAactgcagactggagaaactcaaTGTGGATCATGGTGGAGAGTACACAATGAAACCTGGACttagaaaatATGCCTGtgatctcacactggacccaaacacagcaaacagactcctctctctgtctgaggagaacagaaaggtgacatgtAGGACAGAGGAACAGCCGTACCCTAATCACTCAGAGAGATTTGAGGTCTGGCCacaggtgctgtgtagagagggtctgactgggcgctgttactgggaggtagagATGAGTGGGAGAGGTGCTGATATAGGAGTGACATATAATGGAATCAGAAGGAGAGGATTGGGTAATGACTGTGGGCTTGGATACAATGACAGGTCCTGGAGTCTGTTCTGCTATGACAACAGTTATAGAGCCTGGCATAATCACAATCTCACTATCATAGACGTCCCCGCCTCCAGCtcccacagagtaggagtgtatctggactggccagccggcactctgtccttctacagagtctcctctgacacactgacccacctgtACACATTCCACACCACATTCACTGAgaccctctatccagggtttaggGTTTGGTATGGAgactcctcagtgtccctgtgtcagGTGGTTTCACTCTAATCCTGGTCATGTTCAGTAAGACACACTGGAGCAACAATGTAGAATATCTCTAGTGTGTAAACATATGATTGTAAATATTCATGAATAAACACCATTGAAGTTGACAGACATTGTCAACTAGAGTCTAATAGAATGAATCACCACACTGTGTTGTAAAAACTGTTTTCATTTAGAAATCACTGATCTTGTTGTTATTGGGCTTCTTGGTGCTTGTACATATTGTTGTCTGTTGAATGTTTATTTGTCAAATTCTTGACACAACAATCATGTTTCTGTATCAACTCAAATACACTGAATGAAATgtacatgtgacagatgtgactaATAAAGTTAATCAAccagatggaagaagagaggtg
>XM_036942472.1
cTTGCCTCTGAAATgggtctctctggggagagagaggaagggggccTTGCCTCTGAAATgggtctctctggggagagagaggaggggggccctgCTGAAATGGGTCTCTCTGGGGAACATGACACCAAAGCTAAGAGCCCAATcaagcaggagagaccagcctcccctgtacccagctgtgtgtccatgaagagtgaccAGTCTATGGAACTACCTATAGAGTTTAGAGAGGGAGACTTTTCTACTGAACAAAGAAACCAACAGGAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGAGTCATCAAACAGACCTGGCCTCTATATTCAATttgcttGAAGAGAATATTATCACATTTGTGAAGAACGAGCTGAAGATGTTAAAGAGGATTCTGAGTCCAGAACTCCCACAAGGCTTTGAGAGTCAGAAGCAAGATAAGGAAGTGGTGGATGCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctctgaagatcacactgcacgtcctgaggaaaatgaaccagaaggagcttgctgacacactggagaaaaATGAGCTTGCTGTGATTTGCCAACGTGAACTCAAATCTAATCTAAAGAAGACGTTTCAATGTGTATTTGAGGGGATCGCTAAACAaggaaacccaacacttctcaataagatctacacagagctctacatcacagagggtggaacaggagaggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaacaAGCAAGACCAGAGACTGCAATCAAATGTAACGACATCTTCAAACCCTTAAGTGGACAAGATAAACTtatcagaactgtgctgacaaagggagtcgctggcattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcagGATGTCCAATTTGTATTTTCATTGCCTTTTCGTGAGCTGAATTTGATGAAAAGGGAAAAACACACTTTGATTGAACTTCTCAATCACTTCTCAATGGAAACAAAAGAATCAAGAATCTCCAACTATGACAAGTATaaagttctgttcatctttgatggtctggatgagtgccgactgcccctagacttccagaagaacaagatctgttgtgacgtcacagagtcaacctcagtggatgttctgctgacaaacctcatcaagggaaatctgcttccctctgctctcctctggataactACCCGACCTGCAGCAGCCAATCAGATCCCTTCAGAgtgtgttgaccaggtgacagaggtacgagggttcaatgacccacagaaggaggagtacttcaggaagagattcagtgatgatgaggacctggccagcagaatcatctcacacataaagacatcaaggagcctccacatcatgtgccacattccagtcttctgttggatttcTGCAACAGTCCTTGAAGACATACTGAAAcataagagagaagagatgcccaagactctgactgagatgtacaCACACCTTGTGGTGTTTCACACCAAACAGAAGAATGAGAAGTATCTTGGGAAAGAAGAGACAGGTCCAGACTGGAATAAAGAGAGCATTCTGTCACTGGGAAAACTGGCTTTTCAACAGCTTCTGAATCAcaatctgattttctatgaagaagacctgaaagaggctggcattgatgtcaatgaagccgcagtgtactcaggattgtgcacacaactctttaaagaggaatgtgggctgtaccaggacaaggtgtactgcttcgagcatctgagcattcaggagtttctggctgctgtatatgTGTTCCTTTCATTCAGCAACAACAATGAGAATCTAATGGCCGAACTGCAATCAACATCTAGTAACGATTGTCTACTGAAGCCAGAAGTTACTGTCTACAAGAGCGCTGTGGATAAAGCCTTACAAAATGAGACGGGAAACCTGGACcttttcctccgcttccttctgggcctctcactggagtccaatcagaagcAATTAGGAGGTCTACTGACAAAGACAGGAAGCAGCTCACAGAGCCATGAAGAAACAGTCAAGTACATCAAGGAGAAGATCAGGGAGAATCCCTCTCCAGAGAGGTgcatcaatctgttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaAGATACCTGAGCTCAGGAAGTCTCTCAGAAGCCAAACTCTCACCTTCACAGTTGTCagctctggtctttgtgttgctgacttcagAAAAGGAGCTGGATGTATTTGACCTGAGgaaatactccagatcagaggaagatCTTCTGAGGCTGCTGCCAGTGGTCAAAGCCTCCAGAGCTGCTCTgctgtcaggctgtggagTCACAGAGAAATGCTGTGATTCTCTGGTCTCTGCTCTCATCTCAAACCTCTCACACCTGAGGGAGCTGGATttgagtaacaatgacctgaaggattcaggagtgaagctgctctctgctggactggggaatccccactgtaaactggagattctgaggctgtcacGCTGTcaagtcacagaggaaggctgtgcttctctggtctcagctctgaggtcaaacccctcacacctgagagagctggacctgagctacaatcacccaggagactcaggagtcagactgctctctgctAGACTGGAGGATCCAAactgcagactggagaaactcaaTGTGGAACATGGTGGAGAGTACACAATGAAACCTGGGCttagaaaatATGCCTGtgatctcacactggacccaaacacagtaaacagactcctctctctgtctgaggagaacagaaaggtgacatggaggacagaggagcagccgtatcctgatcacccagagagatttgacTACAGGAAGcaggtgctgtgtagagagggtctgactgggtgctgttactgggaggtagagtggagtgggAGAAGGGCTGCTataggagtgacatataaaggaatcagcaggagaggagagggtgaggactGTCTGATTGGATGGAATGACAAGTCCTGGAGTCTGGTCTGCTCTGACAACCTTTACACGGTATGGCACAATACTAATTCCACTACCATAAACGTCCCCTCCTCCAGCtcccacagagtaggagtgtatctggactggccagccggcactctgtccttctacagagtctcctctgacacactgacccacctgtacacattccacaccacattcactgagcccctctatccagggtttctGGTTTATGACttctcagtgtccctgtgtcacGAGGTCCCTGTGTCAAACACAACTTGGAGCTGCTGACGTCATCTGAGCGCGACTTGTGTTTGTTGTTGGGAGCTGAAAGCTGAACGAgaggtttattgtttttgtaaagCTGACCGTgtttttatattatattattttatgatCCTGCAGCACTGTTGGGCTTAGTGTCTGTGAGTGCTGCTGTCTGTCCCGGTATCCTGCAGCACTGTTGGGCTTAGTTTCTGTGAGTGCTGCTGTCTGTCCCGGTATCCTGCAGCACTGTTGGGCTTAGTTGCTGTGAGTGCTGCTGTCTGTCCCGGGATCCTGCAGCACAGTTGGGCTTAGCTGTCTGTCCCgggtattgtaatgtttttaaaattgtataaactgccttaattttgctggaccccaggaagtagagatgctgccttggcagctaatggggatccacaataaatacaaacaca
>TU1366038
acccagctgtgtgtccatgaagagtgaccAGTCTATGGAACTACCTATAGAGTTTAGAGAGGGAGACTTTTCTACTGAACAAAGAAACCAACAGGAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGAGTCATCAAACAGACCTGGCCTCTATATTCAATttgcttGAAGAGAATATTATCACATTTGTGAAGAACGAGCTGAAGATGTTAAAGAGGATTCTGAGTCCAGAACTCCCACAAGGCTTTGAGAGTCAGAAGCAAGATAAGGAAGTGGTGGATGCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctctgaagatcacactgcacgtcctgaggaaaatgaaccagaaggagcttgctgacacactggagaaaaATGAGCTTGCTGTGATTTGCCAACGTGAACTCAAATCTAATCTAAAGAAGACGTTTCAATGTGTATTTGAGGGGATCGCTAAACAaggaaacccaacacttctcaataagatctacacagagctctacatcacagagggtggaacaggagaggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaacaAGCAAGACCAGAGACTGCAATCAAATGTAACGACATCTTCAAACCCTTAAGTGGACAAGATAAACTtatcagaactgtgctgacaaagggagtcgctggcattggaaaaacagtctctgtgcagaagttcattctggactgggct

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559401.2 False 3653 mRNA 0.46 9 68358050 68390128
XM_036942472.1 False 3719 mRNA 0.47 9 68358050 68493827
TU1366038 True 745 TUCP 0.44 4 68379153 68380632
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110485296 LOC106601187 coding upstream 81491 67902968 ~ 68276559 (+)
LOC110487499 NA coding upstream 99133 68257825 ~ 68258917 (+)
LOC118938462 LOC106606276 coding upstream 162865 68163271 ~ 68195185 (+)
LOC110485294 LOC106606225 coding upstream 257936 68082977 ~ 68101650 (+)
LOC118936532 LOC106606306 coding upstream 278036 68060511 ~ 68102738 (+)
LOC110487485 atp5h coding downstream 13327 68507154 ~ 68518266 (+)
LOC110517069 metrnl coding downstream 148783 68642610 ~ 68671952 (+)
LOC118938359 LOC106602071 coding downstream 323358 68817185 ~ 68829431 (+)
arl16 LOC106606260 coding downstream 367645 68861472 ~ 68865859 (+)
LOC118938558 LOC106601903 coding downstream 471446 68965273 ~ 68966917 (+)
G1197631 NA non-coding upstream 7818 68349248 ~ 68350232 (+)
G1197630 NA non-coding upstream 9036 68348587 ~ 68349014 (+)
G1197628 NA non-coding upstream 12984 68343021 ~ 68345066 (+)
G1197629 NA non-coding upstream 13963 68343322 ~ 68344087 (+)
G1197619 NA non-coding upstream 40183 68316185 ~ 68317867 (+)
G1197662 NA non-coding downstream 8433 68502260 ~ 68502462 (+)
G1197663 NA non-coding downstream 10790 68504617 ~ 68504834 (+)
G1197673 NA non-coding downstream 25851 68519678 ~ 68521431 (+)
G1197674 NA non-coding downstream 29688 68523515 ~ 68523716 (+)
G1197675 NA non-coding downstream 34867 68528694 ~ 68692004 (+)
G1197605 NA other upstream 88340 68267536 ~ 68269710 (+)
G1197473 NA other upstream 579472 67639788 ~ 67778578 (+)
G1196973 NA other upstream 624278 67729986 ~ 67733772 (+)
LOC118938465 LOC106593326 other upstream 759008 67571208 ~ 67601290 (+)
G1197732 NA other downstream 167219 68661046 ~ 68662759 (+)
LOC110539059 LOC106606233 other downstream 507124 69000951 ~ 69007573 (+)
G1198855 NA other downstream 559248 69053075 ~ 69054878 (+)
LOC110487121 LOC106606247 other downstream 636040 69129372 ~ 69148253 (+)
LOC110487489 LOC106606278 coding downstream 16015 68396647 ~ 68426373 (+)
LOC118938490 LOC106603753 coding downstream 60314 68440946 ~ 68454126 (+)
LOC110538878 LOC106594112 coding downstream 97719 68478351 ~ 68492376 (+)
G1197645 NA other downstream 7647 68388279 ~ 68388869 (+)

Expression

LOC110487469(LOC106581592) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

LOC110487469(LOC106581592) Expression in each Bioproject

Bar chart with 21 bars.
LOC110487469(LOC106581592) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network