zgc:103625 (LOC106606248)


Basic Information

Item Value
gene id zgc:103625
gene name LOC106606248
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 69091435 ~ 69098854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939789.1
ATGCTAATCTCTCCTCTAGCAGACAGGAACCAGAAGGAGTTGTGTTCAGTGTTGTGTGATGTGTTGGAGGAGCAGTCTCACAGGGAACTGTTTGCCTTAGAGCTGGGCTCTGGCATCGGACAGCATGTGGTCAACTTCGCCATGGCAACGCCCTTCATCACCTGTGTCAGATCCTACATAGCGGTGACCAAAGTGAAGACCGTGCTGCAGCCTGTGCACCTGGACGCCAGCGAACCCTGGGAGAAGTGGGCGGGCCTTCCACGCGGGGCCTGTGATGTCATCGTGGCCATTAACCTGCTTCAGTGCAGCTCTTTCGACACCGTAGAGggCGTCGTCAAAGGATCAGGACAGATCCTCAGACAAAATGGTCTCTTGATCACACATGGGccCTACGCCATCAACGGCACCATCACCCCCAGCTGTATGGAGGACTTGGACCAGGAACTACGACAGATGAACCCAGGGTGGGGTCTACCAGACATCGACATTCTGAGACAGCTGGCGTTTGGGAACGGGATGCGCATGGAGAGGATGATAGAGAGGGAACAGGATAATAAATACCTGGTCTATCAGGATGTTTAG
>TU1368939
gccCTACGCCATCAACGGCACCATCACCCCCAGCTGTATGGAGGACTTGGACCAGGAACTACGACAGATGAACCCAGGGTGGGGTCTACCAGACATCGACATTCTGAGACAGCTGGCGTTTGGGAACGGGATGCGCATGGAGAGGATGGTGAGTCTCTTTAACCAGTCTGCTGGTGTGTATGTATAAACTAATGTATCTTTAAGGATGGactatactgtacacacagaacATGTAACATGGGTGTCTGCTGCTAACCCCAGTCCTTCTATAAGGATGTTTAGGACCAAGCCTTCAGAATATGTAACAGAAGGTATATCTGCTACTAGCTCAGTCCTTCTATAAGGATGTTTAGGACCAAGCCTTCAGAATATGTAACAGAAGGTATATCTGCTACCAGCTCAGTCCTTCTATCAGGATGTTTAGGATCAAGTCTTCTTTTGTTTCCCCAGATAGAGAGGGAACAGGATAATAAATACCTGGTCTATCAGGATGTTTAGGACCAAGTCATTTGTTTCC
>TU1368938
GCCTACACCAATATGTCATGTCCTTAGCCTCTTCAGAGCAGCTCAAGAAAAGacCATGCTAATCTCTCCTCTAGCAGACAGGAACCAGAAGGAGTTGTGTTCAGTGTTGTGTGATGTGTTGGAGGAGCAGTCTCACAGGGAACTGTTTGCCTTAGAGCTGGGCTCTGGCATCGGACAGCATGTGGTCAACTTCGCCATGGCAACGCCCTTCATCACCTGGCAACGCCCTTCATCACCAGGCAACTGTCAGACATCAAAGAGGAGTCCCGTGACAGTGTCAGATCCTACATAGCGGTGACCAAAGTGAAGACCGTGCTGCAGCCTGTGCACCTGGACGCCAGCGAACCCTGGGAGAAGTGGGCGGGCCTTCCACGCGGGGCCTGTGATGTCATCGTGGCCATTAACCTGCTTCAGTGCAGCTCTTTCGACACCGTAGAGGTAGGCCTAACACGGCAGGTCAGCATTATACGCATCATAATTTGGCTGTGAAGCTTTATGAATGTATGAGTGAAGATGTGTCAGTCACTTATAGCCCGTGTGAAGCGCCAGagtctgggtctctgtctctctccccagggCGTCGTCAAAGGATCAGGACAGATCCTCAGACAAAATGGTCTCTTGATCACACATGGGGTAGGTATCATGGATGGACAGAAg

Function

NR:

description
methyltransferase-like 26 B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939789.1 False 582 mRNA 0.54 6 69091454 69098600
TU1368939 False 517 lncRNA 0.45 2 69091435 69092097
TU1368938 True 660 lncRNA 0.53 3 69092158 69098854
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538856 LOC106606365 coding downstream 102233 68976136 ~ 68989221 (-)
LOC110538842 LOC105006167 coding downstream 154241 68865363 ~ 68937213 (-)
kt3k LOC106601911 coding downstream 230010 68856782 ~ 68861444 (-)
LOC110512740 tbcd coding downstream 235397 68714189 ~ 68856057 (-)
LOC110487472 LOC106592355 coding downstream 760844 68329135 ~ 68330610 (-)
LOC118938362 LOC106602015 coding upstream 436748 69535348 ~ 69538421 (-)
LOC110518542 LOC105006040 coding upstream 439937 69538537 ~ 69671764 (-)
LOC110487134 smim22 coding upstream 725496 69823493 ~ 69828631 (-)
LOC118938364 LOC105012791 coding upstream 780084 69878684 ~ 69909395 (-)
LOC110485326 LOC106594247 coding upstream 868063 69966663 ~ 69979491 (-)
G1199065 NA non-coding downstream 1946 69022513 ~ 69089508 (-)
G1199095 hgs non-coding downstream 13494 69071718 ~ 69077960 (-)
G1199089 NA non-coding downstream 25887 69064732 ~ 69065567 (-)
G1199079 NA non-coding downstream 49029 69041949 ~ 69042425 (-)
G1199078 LOC106606318 non-coding downstream 50074 69040291 ~ 69041380 (-)
G1199105 NA non-coding upstream 1514 69100114 ~ 69100335 (-)
G1199131 NA non-coding upstream 41291 69139891 ~ 69140240 (-)
G1199132 NA non-coding upstream 48647 69147247 ~ 69149879 (-)
G1199133 NA non-coding upstream 52092 69150692 ~ 69151024 (-)
G1199135 NA non-coding upstream 55106 69153706 ~ 69153907 (-)
G1199087 NA other downstream 28577 69060096 ~ 69062877 (-)
G1199049 NA other downstream 97026 68993691 ~ 68994428 (-)
G1199170 NA other upstream 171406 69270006 ~ 69275774 (-)
G1199205 NA other upstream 253881 69352481 ~ 69353948 (-)
G1199212 NA other upstream 265067 69363667 ~ 69366223 (-)
G1199912 LOC105012792 other upstream 826269 69924869 ~ 69925550 (-)

Expression

zgc:103625(LOC106606248) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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zgc:103625(LOC106606248) Expression in each Bioproject

Bar chart with 14 bars.
zgc:103625(LOC106606248) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
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Co-expression Network