G1135265 (LOC106586052)


Basic Information

Item Value
gene id G1135265
gene name LOC106586052
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 839169 ~ 852157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1293068
ggagagtcaacacctttagttgctCCACCTTTCTGGTTAAAATATGTTTTCATTCCAAGTTGAAGCTTCTTTCTGAAGAgagcttatttttttaaatgaatcaaTACAAGCAAACAAGATCGGTTCCGGGGATTGGTATGGCAAATACCTTACGATTTGCCTGGACTGAAAATGAGATGGAGCCGTGGAGTAGAGAGACATTTGGAAGGACTATTTTGATGGGATGCCTCAGGATAGAGGTGAAGGAAGTGCTCTGCCTTCAAGGGAACCCGAATGAGAAGGCTTTCGATGTGACGTTTCACAAAGAAGAAAAACACGACGAAGTAATGAAGATGGCAAAGGAAGCGGAGAAAACGGGACCCCTGTGCCATTATGCGGTGACCAGCCTGGCGAAGAACAACTTCAGGGTGGTCACCGTAACCATGTACAATCCGCACGTGAAAGAtgaagaggtgagggcctttctggggaggtacatggacaatgtctcctcagcgaggtacctcagggactccctgggtttctggaacgggaggagagGATTCCAGGCGTTACTCAGGGAGTCCCCGAAGAGTGTggatggctacctccatcctccggcgatgttctccctgggggctgacaggggaacACTCTACTATGCACGTCAGCCCCCGTTCTGCAGGCGTTGTATGGCCTACGGCCATATCCTGGCCTCGTGCAGCGCCAAGAAATGTCGTTTTTGTGGGTCGGAAGAGCACGAGGCCAAGGAGTGTGACGAGCCC
>TU1293067
GGATTGTACGGATGGCACAGGGGAAAGGACGGAGAAGGACGAAGAAGGGAAGAAGGAAGAGgcgaaaagaaagaggagagaagatggaaaGAAGGAAAAAGGAGAGATTAAAAAGAAGGTGGAAGAACGTGGAGgagcagagaagagggagaaggggacagtggtacgagaaggagcggttttttgttatttagagggtgtggggtttgatttctgttttttacaggaggctcacctgagggatggtggg
>TU1293072
cgcccctgtgtgttacaaacaggcacttggtgataggaggagactttaatatagatttagggttaggcggtgatagcagtgcaggtgccatctctgggctaatggcttgccatggtctggttgatggtggcctgcacactactccggcaatggtcggtcctacatggcgcaactccaggggggttgcgcggaggctcgactacatttttgtatccaggtctttgggtcagttgtctgggcggctgttgcctgttttcttcacggatcacgacggggtgttcctgcaggtggggtcgccagtctgcctcttcggtagggggtactggaagttagatcgggatatactggaggagcaggctttcgttgatgcatttttttgtttctttcggaggcttgacggcctccggtccatgtgcgagggggtg
>TU1293074
cgcccctgtgtgttacaaacaggcacttggtgataggaggagactttaatatagatttagggttaggcggtgatagcagtgcaggtgccatctctgggctaatggcttgccatggtctggttgatggtggcctgcacactactccggcaatggtcggtcctacatggcgcaactccaggggggttgcgcggaggctcgactacatttttgtatccaggtctttgggtcagttgtctgggtggctgttgcctgttttcttcacggatcacgacggggtgttcctgcaggtggggtcgccagtctgcctcttcggtagggggtactggaagttagatcgggatatactggaggagcaggctttcgttgatgcatttttttgtttctttcggaggcttgacggcctccggtccatgtgcgagggggtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1293068 False 764 TUCP 0.51 3 839169 850428
TU1293067 False 250 lncRNA 0.48 3 840058 846245
TU1293072 False 425 TUCP 0.55 2 846490 852157
TU1293074 True 425 TUCP 0.55 2 846490 852157

Neighbor

gene id symbol gene type direction distance location
LOC118938130 NA coding upstream 2166 830063 ~ 837892 (+)
LOC118938496 NA coding upstream 14016 824513 ~ 826042 (+)
LOC118938138 NA coding upstream 15420 820987 ~ 824638 (+)
LOC118938495 NA coding upstream 29476 802023 ~ 810582 (+)
LOC118938115 NA coding upstream 69402 761228 ~ 770656 (+)
LOC118938137 NA coding downstream 19924 866169 ~ 869178 (+)
LOC118938141 NA coding downstream 26863 873108 ~ 874247 (+)
LOC118938125 NA coding downstream 29413 875658 ~ 882620 (+)
LOC118938116 NA coding downstream 47573 893818 ~ 898767 (+)
LOC118938123 NA coding downstream 56121 902366 ~ 1145194 (+)
G1135254 NA non-coding upstream 49504 789727 ~ 790554 (+)
G1135127 NA non-coding upstream 71847 719114 ~ 768211 (+)
LOC118938131 LOC106595271 non-coding upstream 108697 718798 ~ 731721 (+)
G1135237 NA non-coding upstream 126731 711926 ~ 713327 (+)
G1135235 NA non-coding upstream 135873 703831 ~ 704185 (+)
G1135271 LOC106586052 non-coding downstream 2566 848811 ~ 854578 (+)
G1135279 NA non-coding downstream 77660 923905 ~ 1203312 (+)
G1135280 NA non-coding downstream 86921 933166 ~ 933612 (+)
G1135150 NA non-coding downstream 87404 933649 ~ 1301592 (+)
G1135226 NA other upstream 144648 694629 ~ 695410 (+)
LOC110515442 LOC106593022 other upstream 613448 215012 ~ 231242 (+)
G1135108 NA other downstream 29407 875652 ~ 1318383 (+)
G1135135 NA other downstream 455994 1302239 ~ 1305371 (+)
G1135355 NA other downstream 536193 1382438 ~ 1385803 (+)
LOC118938396 LOC106595654 other downstream 776855 1623073 ~ 1627806 (+)
G1135455 LOC106607538 other downstream 958128 1804373 ~ 1823552 (+)
LOC118938121 NA non-coding downstream 93207 945364 ~ 999629 (+)

Expression

G1135265(LOC106586052) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
End of interactive chart.

G1135265(LOC106586052) Expression in each Bioproject

Bar chart with 20 bars.
G1135265(LOC106586052) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network