G1137106 (LOC106564107)


Basic Information

Item Value
gene id G1137106
gene name LOC106564107
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3014517 ~ 3074478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1295551
TGAGTTCTTCCAAATGGTTCTTTATtgggaaatatatacaaaataaatgcattaatctacacacacatgTGCATACAGATATAATAGTGCTTTCTTTGCACACATATCCTGTTATTTGGTACTTTATGATCACTGAGTGAATTAGACAATGCAAGTTAATAAATACTGAAATTAACATGATCTGCAATTGAAAAGTATAGTATTTTATAGTATAGTATGCAAGTGTAACCAGATACACTACAgaaccaaaagtatatggacacgaacatctcattctaaaatcatgggcattaatatggagttggtgcccacattgctgctataacagccttcagtcttctgggaaggctttccactagatgttggaacattgctacgggCACTTGCTTCCATTCTGTGAGGGAGCGGTAGGAAAGGACGTGGAGAGCCACACCCACTCATCAGGATTTCCAACCATTCACCTCTGCTCATATGCTCTGACCCCAACCCCTCCTCTACATAACGGACTGGTCCATACCGTTGTGTTGCACCACGTGTTTGTTCTTGTGTCGTCGTGGCAACATGATTTTCATCTGTTAATGGCTCATGCGCGTGTGTTTATAGTAAGAAGAGTAGATGAAACAGGAGATCACCAAGAGGATCACCACCGAAGCCAGCCCTGCAATGATGGGCAGGTAGTCCACTACAGGgcaggagagtagaaagagaggagagggagatgcagatggggcagagaggaggaggaggagaggagagggagatgcagatggggcagagaggaggaggaggagagggagagaggagagggagacgcagatgggagagaggggcagaggggagtagCATTTGCACTACAGGCCAGTGATAAGGTGTCGCCCTCTGTGATTCTCATGGAGAAACATCCAGGACTCCTAGTGATCTGAGGCTTGTctagaagagaaggaaggagggagagagagagagatgagaagagaaacAAGTTGATTAATGAGAGAAAATGAAGTGAAAACAGCATCCGTCAACGTCATGACTCGTCTGGTATTTAATTAACTAACGGTTGTACTAAATGTGTGTAGACAGAGAACCAGAAGGACTCACAGTGCACGTTGATGTTGAGGCGGTTTGATTCCATTACAGGAGGAGGTTGGGGTCCCTCTGGTCCCAGATCCAACATGGCTGAACACAACAACTGGGCCCCGTCATCATCTCTACCAGGGGTGAAGTGCAGGGTGTAGGTCCCATTCTCTGGTGTCTTGATGTTGTCCTTGGATTTATGTTGTGTGTCTAATTCTGTCTGTTCACCAGTGGCACTGACTTTGAAGAAGGTCACCCTGAGTCTCCCAATAGGAGCAATGTTCTGGACAAGACACTGTAGCAGGTACTGATGCCCCTCAACCATCGGATCAGGGTACTTCCTGTAGCTGATGGAGACACTGTCTGGAAGCTCTGTGGAGGAATGGAAACACACAGTGATTAACAGTGCAGAGCCATAGTAAGAATACATTCAGAAACACCAGAGAAGATAAGAGAGAGATGTCACTCACTATAAACTGTGATGTCCAGCTGTTTCAGACACTGGCCTCCGTCTGTGAAGCACTTAGGGTTGTTCTCCCAGTCAGTCAAACTGTC
>TU1295558
cctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttgaacttgcaaccttccggttactagcccaacgctctaaccactaggctaccctgccgccccaataaatatattttctaatacttattaaaaatgaaaaacagaaatacattatttacataagtattcagacccttcgctatgagactcgaaattgaactcaggtgcatcctgtttccattgatcatccttgagacgtttctacaactcgattggagtccacctgtggtaaattcaattgattggacatgatttggaaaggcacacacctgtctatataaggtcccgcagttgacagtgaatgtcagagcaaaaaccaagccatgaggtcgaagtaattgtccattgagctccgagacaggattgtgtcgaagcacagatctggggaagggtaccaaatattatctgcagcattgaaggtccccaagaacacagtggcctccatcattcttaaatggaagaatttggaaccaccaagactcttcctagagctggtagcccggccaaacagagcaatcaggggagaagggccttggtgggggaggtaaccaagaacccgatggtcactctgaaaaagccctagaattcctctgtggagatgggagaaccttccagaaggacaaccatctctgcagcactccaccaatcaggggagaagggccttggttggggaggtaaccaagaacccgatggtcactctgaaaaagccctagaattcctctgtggagatgggagaaccttccagaaggacaaccatctctgcagcactccaccaatcaggccctgtAAACATGTGTTGTCTGCATGCAGATGTATTGACTCTCTGGGCAGAATAAACTTGGTTGAACTTTCATAAATGTTCGTTGAGTTTTTCACTCTGAGATTTAGAgcctgagatgctgtgccttagaccactgcaccactcgggagcccaaatacaggtgtgccaagcttgtaccgtcatacccaagaagactcggggctgtcatcgctgccaaaggtgcttcaacaaagtactgagtaaaggttctgaatacttacgtaaatgtgataacattttgtatttattataaatttgcaaaaagtgtctaaaaacctgtttttgtatgtcattatggggcattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattctgtgtagattcatgaggtgggggaaacaattgaatcaattttagaatatggctgtaaagtGACACAatttagaaaaagtcaaggggtctgaatactttccacgCAACCAACCAATCAGTCAATGAACCACCCAACCAATCAACCATCCAACCAATCATCCATCCAACCAATCAACCATCCAACCAATCATTCATCCAACCAACCAATCATTCAATGAtccatccaaccaaccaaccaaccaatcattcAATGAACCATCCAACCAATCAACCATCCAACCAATTATCCATCCAACCAATCAACCATCTGTCTCACCTGTGACCTCCACGTTAACAGTACAGGTGCTGTTTCCCAGGGGGTTGATGGCGATGCAGGTGTAATCTCCAGAGTGAGACTTGGCAATGTTGGTGATGGTCACTACGGATCTCTCTTCCATGGTGTTGGGGTCGGCTTGGGGGAGCAACCAATTGTAGGAGGGGGCAGGGTTACCATTTGCACTACAGTTAAGTGATAGGGTGTCGCCCTCCGTGATGCTCATGGAGAAACATCCAGGACTCATAGTGATCTGAGGCTTGTCTGAGGGGggacagtgagtgagagagtgagtgagagagagagagagaaacaagttGATTAATGACAGAAAATGAAGTGAAAACAGCATCCGT
>TU1295552
TGGTGTTGAGGCGGTTTGATTCCACTACAGCAGGAGGTTGGGGTCCCTCTGGTCCAAGATCCAACATGGCTGAACACAACAACTGGGCCCCGTCATCATCTCTACCAGGGGTGAAGTGCAGGATGTAGGTCCCATTCTCTGGTGTCTTGATGTTGTCCTTGGCTTTCTGTCGTGTGTCTAATTCTGTCTGTTCACCAGTGGCACTGACTTTGTAGAAGGTCACCCTGAGTCTCCCAATAGGAGCGATGTTCTGGACAAGACACTGTAGCAGGTACTGATGCCCCTCAACCATCGGATCAGGGTACTTCCTGTAGCTGATGGAGACACTGTCTGGAAGCTCTGTGGAGGAATGGAAACACACAGTGATTAACAGTGCAGAGCCATAGTAAGAATACATTCAGAAACACCAGagaagataagagagaggtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtaCTAGACCAGAAGTCTAATTTACCAAacacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtaCTAGAACAGAAGTCTAACTTACCAagcacctgtatcacaacattgtaCTAGAACAGAAGTCTAACTTACCAAGCACCTGTATCACAACGATGTACTAGACCAGAAGTCTAATTTACCAAGCACCTGTATCACAACGATGTACTAGATCAGAAGTCTAACTTACCAAGCACCTGTATCACAACGTTGTACTAGACCAGAAGTCTAACTTACCAagcacctgtatcacaacattgtaCTAGAACAGAAGTCTAACTTACCAagcacctgtatcacaacattgtaCATTGTACTATTCTGTTAGGCGAGCTGAATCATTTTGACTGGAAACTCC
>TU1295550
GCCTCTCTTACCTGTCCACCCTCCAGTTTAGGATCTTCACCTCCTTGTCTGTTAGACCAACCCCTCCCTGGAAGGCTTCCCAGCCCATCTCTACAGGGATATCTGAGCTGCAGTTAGAGGAGGCTGGGTCTCCATGCTTCACCACCAGCCTGGCAGGACTGACCACCAGGCACTCAGCATCTGGAAGACCAAGGACAAGTTAAAACTGTATTGTTCTGTTATTGTTGATTTTATTGTTCAAACCAATCAGGACGATATTATTGTCTAATGTTTATATCTATCTGTATGTTAATCAACTACATGTTACACTCCATAAACCAGaagtcgcccccccccccccccaaaaaaggggttaaatatgtgtatttccttttaaatatatatttttttttgggggggggggggggtacttacAATAATCCTAAAATCAAATAGGTAAATGATCAATGGTACGACCATCTTAGAACAATTCCATATTTTACCTCAGTAGAATGGAATTTACCAagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaacttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtaCTAGAACAGAAGTCTAACTTACCAagcacctgtatcacaacattgtaCTAGAACAGAAGTCTAACTTACCAAGCACCTGTATCACAACGATGTACTAGACCAGAAGTCTAATTTACCAAGCACCTGTATCACAACGATGTACTAGATCAGAAGTCTAACTTACCGGTGAAGTCACAATACAGAGACAATAATGAAACAAGTATTACAATCTCCATTCCCCGTAATAATCCCTGAGCGTCCCTCAGTGAAGGACACTGTATTCTGTTAGGCGAGCGGCATACGTGGTTTCTTCTCCAGTGACCGTTGAACGTGAAAGTACTATTTACTGGAAAACCCTAACcgacccttcctcctcctcttatctctctcacacacactctctttctctctttctctctctctcacacacactctctctctctctctctctcttcctctctcacacagtgttctatcactctctctctctctcttcctctctctctctctctctctctctctctctcttcctctctctctctctctgccctctctctctctctctctctgtctctctctgccctctctctctctgtctctctctgccctctctctctctcactctctcttgctctctctccctcttcctctctcacacagtgttctatcactctccttctctcggGG
>TU1295557
TGAGTTCTTCCAAATGGTTCTTTATtgggaaatatatacaaaataaatgcattaatctacacacacatgTGCATACAGATATAATAGTGCTTTCTTTGCACACATATCCTGTTATTTGGTACTTTATGATCACTGAGTGAATTAGACAATGCAAGTTAATAAATACTGAAATTAACATGATCTGCAATTGAAAAGTATAGTATTTTATAGTATAGTATGCAAGTGTAACCAGATACACTACAgaaccaaaagtatatggacacgaacatctcattctaaaatcatgggcattaatatggagttggtgcccacattgctgctataacagccttcagtcttctgggaaggctttccactagatgttggaacattgctacgggCACTTGCTTCCATTCTGTGAGGGAGCGGTAGGAAAGGACGTGGAGAGCCACACCCACTCATCAGGATTTCCAACCATTCACCTCTGCTCATATGCTCTGACCCCAACCCCTCCTCTACATAACGGACTGGTCCATACCGTTGTGTTGCACCACGTGTTTGTTCTTGTGTCGTCGTGGCAACATGATTTTCATCTGTTAATGGCTCATGCGCGTGTGTTTATAGTAAGAAGAGTAGATGAAACAGGAGATCACCAAGAGGATCACCACCGAAGCCAGCCCTGCAATGATGGGCAGGTAGTCCACTACAGGgcaggagagtagaaagagaggagagggagatgcagatggggcagagaggaggaggaggagaggagagggagatgcagatggggcagagaggaggaggaggagagggagagaggagagggagacgcagatgggagagaggggcagaggggagtagCAATCATCCAACGAGGGGGCAGGGTTACCATTTGCACTACAGGCCAGTGATAAGGTGTCGCCCTCTGTGATTCTCATGGAGAAACATCCAGGACTCCTAGTGATCTGAGGCTTGTctagaagagaaggaaggagggagagagagagagatgagaagagaaacAAGTTGATTAATGAGAGAAAATGAAGTGAAAACAGCATCCGTCAACGTCATGACTCGTCTGGTATTTAATTAACTAACGGTTGTACTAAATGTGTGTAGACAGAGAACCAGAAGGACTCACAGTGCACGTTGATGTTGAGGCGGTTTGATTCCATTACAGGAGGAGGTTGGGGTCCCTCTGGTCCCAGATCCAACATGGCTGAACACAACAACTGGGCCCCGGCATCATCTCTACCAGGGGTGAAGTCCAGGGTGTAGGTCCCATTCTCTGGTGTCTTGATGTTGTCCTTGGCTTTCTGTCGTGTGTCTAATTCTGTCTGTTCACCAGTGGCACTGACTTTGTAGAAGGTCACCCTGAGTCTCCCAATAGGAGCGATGTTCTGGACAAGACACTGTAGCAGGTACTGATGCCCCTCAACCATCGGATCAGGGTACTTCCTGTAGCTGATGGAGACACTGTCTGGAAGCTTATAAACTGTGATGTCCAGCTGTTTCTCACACTGGCCTCCGTCTGTGAAGCATGAAGGTTTGATCTTCCAGTCAGTCaaaCTGTCCACCCTCCAGTTTAGGATCTTCACCTCCTTGTCTGTTAGACCAACCCCTCCCTGGAAGGCTTCCCAGCCCATCTCTACAGGGATATCTGAGCTGCAGTTAGAGGAGGCTGGGTCTCCATGCTTCACCACCAGCCTGGCAGGACTGACCACCAGGCACTCAGCATCTGGAAGACCAAGGACAAGTTAAAACTGTATTGTTCTGTTATTGTTGATTTTATTGTTCAAACCAATCAGGACGATATTATTGTCTAATGTTTATATCTATCTGTATGTTAATCAACTACATGTTACACTCCATAAACCAGaagtcgcccccccccccccccaaaaaaggggttaaatatgtgtatttccttttaaatatatatttttttttgggggggggggggggtacttacAATAATCCTAAAATCAAATAGGTAAATGATCAATGGTACGACCATCTTAGAACAATTCCATATTTTACCTCAGTAGAATGGAATTTACCAagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaacttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtaCTAGAACAGAAGTCTAACTTACCAagcacctgtatcacaacattgtaCTAGAACAGAAGTCTAACTTACCAAGCACCTGTATCACAACGATGTACTAGACCAGAAGTCTAATTTACCAAGCACCTGTATCACAACGATGTACTAGATCAGAAGTCTAACTTACCGGTGAAGTCACAATACAGAGACAATAATGAAACAAGTATTACAATCTCCATTCCCCGTAATAATCCCTGAGCGTCCCTCAGTGAAGGACACTGTATTCTGTTAGGCGAGCGGCATACGTGGTTTCTTCTCCAGTGACCGTTGAACGTGAAAGTTTACTGGAAAACCCTAACcgacccttcctcctcctcttatctctctcacacacactctctttctctctttctctctctctcacacacacactctctttctctctctctcttcctctctctctctctctctctctctctctctctcttcctctctctctctctctgccctctctctctctctctctctgtctctctctgccctctctctctctgtctctctctgccctctctctctctcactctctcttgctctctctccctcttcctctctcacacagtgttctatcactctccttctctcggGG
>TU1295559
AAGTCTAATTTACCAagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtaCTAGACCAGAAGTCTAATTTACCAAacacctgtatcacaacattgtactagaccagaagtctaatttaccaagcacctgtatcacaacattgtaCTAGAACAGAAGTCTAACTTACCAagcacctgtatcacaacattgtaCTAGAACAGAAGTCTAACTTACCAAGCACCTGTATCACAACGATGTACTAGACCAGAAGTCTAATTTACCAAGCACCTGTATCACAACGATGTACTAGATCAGAAGTCTAACTTACCGGTGAAGTCACAATACAGAGACAATAATGAAACAAGTATTACAATCTCCATTCCCCGTAATAATCCCTGAGCGTCCCTCAGTGAAGGACACTGTATTCTGTTAGGCGAGCGGCATACGTGGTTTCTTCTCCAGTGACCGTTGAACGTGAAAGTACTATTTACTGGAAAACCCTAACcgacccttcctcctcctcttatctctctcacacacactctctttctctctttctctctctctcacacacacactctctttctctctctctcttcctctctctctctctctctctctctctctctctcttcctctctctctctctctgccctctctctctctctctctctgtctctctctgccctctctctctctgtctctctctgccctctctctctctcactctctcttgctctctctccctcttcctctctcacacagtgttctatcactctccttctctcggGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1295551 False 1629 lncRNA 0.46 4 3014517 3074478
TU1295558 False 1947 lncRNA 0.45 2 3040727 3057313
TU1295552 False 1042 lncRNA 0.43 3 3047967 3055318
TU1295550 False 1569 lncRNA 0.43 3 3053022 3070291
TU1295557 False 3068 lncRNA 0.45 6 3053022 3074478
TU1295559 True 947 lncRNA 0.43 2 3053022 3054043

Neighbor

gene id symbol gene type direction distance location
LOC110514903 LOC106594799 coding downstream 46730 2941965 ~ 2967787 (-)
LOC110493365 LOC106564074 coding downstream 218215 2789766 ~ 2796302 (-)
LOC110493340 LOC106564070 coding downstream 226988 2782314 ~ 2787529 (-)
LOC110493346 LOC106564071 coding downstream 233198 2773980 ~ 2781319 (-)
LOC118938421 NA coding downstream 241268 2771785 ~ 2773249 (-)
LOC110493360 LOC106564102 coding upstream 58525 3133003 ~ 3158838 (-)
LOC110514041 LOC106585204 coding upstream 86713 3161191 ~ 3197982 (-)
LOC118938425 NA coding upstream 87168 3161646 ~ 3162575 (-)
LOC110519358 LOC106564100 coding upstream 264550 3337677 ~ 3341727 (-)
LOC118938390 LOC106585183 coding upstream 278688 3353166 ~ 3370727 (-)
G1137111 NA non-coding downstream 273 2991341 ~ 3014244 (-)
G1137119 NA non-coding downstream 11713 3000988 ~ 3002804 (-)
G1137104 NA non-coding downstream 24395 2989842 ~ 2990122 (-)
G1137102 NA non-coding downstream 28939 2984777 ~ 2985578 (-)
G1137099 NA non-coding downstream 38675 2975493 ~ 2975842 (-)
G1137148 NA non-coding upstream 4513 3078991 ~ 3080699 (-)
G1137147 NA non-coding upstream 8916 3083394 ~ 3084944 (-)
G1137146 NA non-coding upstream 10978 3085456 ~ 3085762 (-)
G1137149 NA non-coding upstream 12283 3086761 ~ 3086960 (-)
G1137150 NA non-coding upstream 12564 3087042 ~ 3087308 (-)
G1136948 NA other downstream 154476 2859031 ~ 2860041 (-)
G1136568 NA other downstream 492156 2521827 ~ 2522361 (-)
LOC118938509 LOC106564044 other downstream 499599 2507219 ~ 2518648 (-)
G1136455 NA other downstream 769199 2187440 ~ 2245318 (-)
G1136447 NA other downstream 826806 2171650 ~ 2187711 (-)
G1137174 NA other upstream 55135 3129613 ~ 3130553 (-)
LOC110487308 LOC106595461 other upstream 453961 3521685 ~ 3532141 (-)
G1137666 NA other upstream 657143 3731621 ~ 3733300 (-)
G1137672 LOC106595836 other upstream 690804 3765282 ~ 3765816 (-)

Expression


Co-expression Network