G1137147


Basic Information

Item Value
gene id G1137147
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3083394 ~ 3084944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1295609
CGAAAGGGGTGGAGTCAACTGACAGACCACACCCATTCTGTCCCAGCTGCAGCGAGGAGCTCCAATCAGAATCGCACTGGTTTAAACCAGTTTGACccatgcagagagacagagagaggcctgagagagagagatagtttgGTTCAGAGGGGATGGAGGTGAGATTGGTTGGGTAGCGGTTTTAAGTTCTAGGTTCTAGGTAACAGTTCAAAAGCCGGTTCTGAGTTCTAGGTGACTAGaaggggagggagtggagggtggaACGACGCctataaaataaaacaaacaaattatGAATAACAAAATCAAACAGATCATGTGCTATTAAACTggaaatgagggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGgtagaagtgggggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtggggtggaggtgggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtgaggtggaggtggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtggggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAACTGGAGCAGGGTGAAGTTTAGCATTTTCCACAAATGGTTAACGTCAGGATTGGAGAGGGGAATCTGATCCTAGAGCTGACTCTGCAAATACTGGCCCGGTGCAGGTTTTCAATGGGTCAGGCTAATGCTAGCGATACTAGCCCAATTAACGCTAGGGAAGTTAGCATCTTCACAGCATGTTTTCAATAAGACAAGCTAACGCTAGTAAAGGGTGTAGCTAGGTCTGAAAAGGTCAAAAGTCTAAAGGAAGGATTCAATTCATGACAGAGTCATTTCTCCTCCttcgcctctccctccctctctggttcttcCTCATCTTCTTTGTCCTCTTCCTCGTCTTCTTCTTTGTCCTCTTCGTTGTCGGTATTGGCGTTGGGAACCCAGAGTCCTGAGTCAATACACCTCTTCATGTG
>TU1295610
CGAAAGGGGTGGAGTCAACTGACAGACCACACCCATTCTGTCCCAGCTGCAGCGAGGAGCTCCAATCAGAATCGCACTGGTTTAAACCAGTTTGACccatgcagagagacagagagaggcctgagagagagagatagtttgGTTCAGAGGGGATGGAGGTGAGATTGGTTGGGTAGCGGTTTTAAGTTCTAGGTTCTAGGTAACAGTTCAAAAGCCGGTTCTGAGTTCTAGGTGACTAGaaggggagggagtggagggtggaACGACGCctataaaataaaacaaacaaattatGAATAACAAAATCAAACAGATCATGTGCTATTAAACTggaaatgaggtggggggggggttaatataaagatGGGACTATGGAGAAAGGGACTATGGGtagaagtggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGtagaagtggggggggggtaatatAAAGATGGGGTTATGGAGAAAGGGACTATGGGTAGAAGTGGGGTGGAGGTGTGGGGGTTAATATAAAGATGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtgaggtggaggtggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtggggtggaggtggggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAACTGGAGCAGGGTGAAGTTTAGCATTTTCCACAAATGGTTAACGTCAGGATTGGAGAGGGGAATCTGATCCTAGAGCTGACTCTGCAAATACTGGCCCGGTGCAGGTTTTCAATGGGTCAGGCTAATGCTAGCGATACTAGCCCAATTAACGCTAGGGAAGTTAGCATCTTCACAGCATGTTTTCAATAAGACAAGCTAACGCTAGTAAAGGGTGTAGCTAGGTCTGAAAAGGTCAAAAGTCTAAAGGAAGGATTCAATTCATGACAGAGTCATTTCTCCTCCttcgcctctccctccctctctggttcttcCTCATCTTCTTTGTCCTCTTCCTCGTCTTCTTCTTTGTCCTCTTCGTTGTCGGTATTGGCGTTGGGAACCCAGAGTCCTGAGTCAATACACCTCTTCATGTG
>TU1295611
CGAAAGGGGTGGAGTCAACTGACAGACCACACCCATTCTGTCCCAGCTGCAGCGAGGAGCTCCAATCAGAATCGCACTGGTTTAAACCAGTTTGACccatgcagagagacagagagaggcctgagagagagagatagtttgGTTCAGAGGGGATGGAGGTGAGATTGGTTGGGTAGCGGTTTTAAGTTCTAGGTTCTAGGTAACAGTTCAAAAGCCGGTTCTGAGTTCTAGGTGACTAGaaggggagggagtggagggtggaACGACGCctataaaataaaacaaacaaattatGAATAACAAAATCAAACAGATCATGTGCTATTAAACTggaaatgagggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGgtagaagtgggggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtggggtggaggtgggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtgaggtgggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtgaggtggaggtggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtggggtggaggtggggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAACTGGAGCAGGGTGAAGTTTAGCATTTTCCACAAATGGTTAACGTCAGGATTGGAGAGGGGAATCTGATCCTAGAGCTGACTCTGCAAATACTGGCCCGGTGCAGGTTTTCAATGGGTCAGGCTAATGCTAGCGATACTAGCCCAATTAACGCTAGGGAAGTTAGCATCTTCACAGCATGTTTTCAATAAGACAAGCTAACGCTAGTAAAGGGTGTAGCTAGGTCTGAAAAGGTCAAAAGTCTAAAGGAAGGATTCAATTCATGACAGAGTCATTTCTCCTCCttcgcctctccctccctctctggttcttcCTCATCTTCTTTGTCCTCTTCCTCGTCTTCTTCTTTGTCCTCTTCGTTGTCGGTATTGGCGTTGGGAACCCAGAGTCCTGAGTCAATACACCTCTTCATGTG
>TU1295612
CGAAAGGGGTGGAGTCAACTGACAGACCACACCCATTCTGTCCCAGCTGCAGCGAGGAGCTCCAATCAGAATCGCACTGGTTTAAACCAGTTTGACccatgcagagagacagagagaggcctgagagagagagatagtttgGTTCAGAGGGGATGGAGGTGAGATTGGTTGGGTAGCGGTTTTAAGTTCTAGGTTCTAGGTAACAGTTCAAAAGCCGGTTCTGAGTTCTAGGTGACTAGaaggggagggagtggagggtggaACGACGCctataaaataaaacaaacaaattatGAATAACAAAATCAAACAGATCATGTGCTATTAAACTggaaatgagggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGgtagaagtgggggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtggggtggaggtggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAGTGGGGGAGGGGGTTAATATAAAGATGGGGTCATGGAGAAAGGGACTATGGGTagaagtgtggggggggggttaatataaagatGGGACTATGGAGAAAGGGACTATGGGtagaagtggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGtagaagtggggggggggtaatatAAAGATGGGGTTATGGAGAAAGGGACTATGGGTAGAAGTGGGGTGGAGGTGTGGGGGTTAATATAAAGATGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtgaggtgggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtgaggtggaggtggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtggggtggaggtggggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAACTGGAGCAGGGTGAAGTTTAGCATTTTCCACAAATGGTTAACGTCAGGATTGGAGAGGGGAATCTGATCCTAGAGCTGACTCTGCAAATACTGGCCCGGTGCAGGTTTTCAATGGGTCAGGCTAATGCTAGCGATACTAGCCCAATTAACGCTAGGGAAGTTAGCATCTTCACAGCATGTTTTCAATAAGACAAGCTAACGCTAGTAAAGGGTGTAGCTAGGTCTGAAAAGGTCAAAAGTCTAAAGGAAGGATTCAATTCATGACAGAGTCATTTCTCCTCCttcgcctctccctccctctctggttcttcCTCATCTTCTTTGTCCTCTTCCTCGTCTTCTTCTTTGTCCTCTTCGTTGTCGGTATTGGCGTTGGGAACCCAGAGTCCTGAGTCAATACACCTCTTCATGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1295609 False 1056 lncRNA 0.48 2 3083394 3084944
TU1295610 False 1117 lncRNA 0.48 3 3083394 3084944
TU1295611 False 1129 lncRNA 0.48 2 3083394 3084944
TU1295612 True 1412 lncRNA 0.48 3 3083394 3084944

Neighbor

gene id symbol gene type direction distance location
LOC110514903 LOC106594799 coding downstream 115607 2941965 ~ 2967787 (-)
LOC110493365 LOC106564074 coding downstream 287092 2789766 ~ 2796302 (-)
LOC110493340 LOC106564070 coding downstream 295865 2782314 ~ 2787529 (-)
LOC110493346 LOC106564071 coding downstream 302075 2773980 ~ 2781319 (-)
LOC118938421 NA coding downstream 310145 2771785 ~ 2773249 (-)
LOC110493360 LOC106564102 coding upstream 48059 3133003 ~ 3158838 (-)
LOC110514041 LOC106585204 coding upstream 76247 3161191 ~ 3197982 (-)
LOC118938425 NA coding upstream 76702 3161646 ~ 3162575 (-)
LOC110519358 LOC106564100 coding upstream 254084 3337677 ~ 3341727 (-)
LOC118938390 LOC106585183 coding upstream 268222 3353166 ~ 3370727 (-)
G1137148 NA non-coding downstream 2695 3078991 ~ 3080699 (-)
G1137106 LOC106564107 non-coding downstream 8916 3014517 ~ 3074478 (-)
G1137112 NA non-coding downstream 45569 3013980 ~ 3037825 (-)
G1137130 NA non-coding downstream 61132 3020435 ~ 3022262 (-)
G1137109 NA non-coding downstream 65094 3017123 ~ 3018300 (-)
G1137146 NA non-coding upstream 512 3085456 ~ 3085762 (-)
G1137149 NA non-coding upstream 1817 3086761 ~ 3086960 (-)
G1137150 NA non-coding upstream 2098 3087042 ~ 3087308 (-)
G1137166 NA non-coding upstream 26376 3111320 ~ 3113165 (-)
G1137176 NA non-coding upstream 60611 3145555 ~ 3146205 (-)
G1136948 NA other downstream 223353 2859031 ~ 2860041 (-)
G1136568 NA other downstream 561033 2521827 ~ 2522361 (-)
LOC118938509 LOC106564044 other downstream 568476 2507219 ~ 2518648 (-)
G1136455 NA other downstream 838076 2187440 ~ 2245318 (-)
G1136447 NA other downstream 895683 2171650 ~ 2187711 (-)
G1137174 NA other upstream 44669 3129613 ~ 3130553 (-)
LOC110487308 LOC106595461 other upstream 443495 3521685 ~ 3532141 (-)
G1137666 NA other upstream 646677 3731621 ~ 3733300 (-)
G1137672 LOC106595836 other upstream 680338 3765282 ~ 3765816 (-)

Expression


Co-expression Network