G1137435


Basic Information

Item Value
gene id G1137435
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3334109 ~ 3335671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1296047
CTATGTATGGCTGTGTTAGCTGGTAGGAGGTAGCAGAGACAGTACTGCGGCTCTGGAAGGCTCCTTCAGCGATGATGAACAGCGTTCTCTTCTTCATTATGTTGCAGTTGGTCACCGTCAGGGCATTGGCCTTACTGCAACACGGTGAAACAGATATCAACCGTCTTACCGTCTGGCATCACACGTCTTACTGTCTGACATCACACGTCAACACAACCGTCTTATTGTCTGACATCACACATCAACACAACCGTCTGACATCACATGTCAACACAACCGTCTGACATCACACACCAACACAACCGTCTTATTGTCTGACATCACACGTCAACACAACCGTCTTATTGTCTGACATCACACATCAACACAACAAGCCTCTGTGGTGTTTCCATGGTaacggggggaggggaggagcctCTGTGGTGTTCCCACGGTAACGCTGGGGAGGGGAGGAGCCTCTGTGGCGTTTCCACGGTAacgggggggaggggaggagcctCTGTCTCTTCGGTTTGGCTCTCCTCTGTAGTCATGGCCTTCAGGATGGTGGCAAGCTAGTGTTAGCATAGCGGCTAAGTGTTACATGTTTTCCTATGAAAAATGTTGGCCCTGTTACCCACATCTTAGTAATAAAGGTAACAGTTATTACTATTACATTACTGTGTTATAGGCTACAGGAGGCTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGGTCTACAGGAGGCTGGTGTCTAGTGAACACAGGTTGGGTCCTCCTCAGGAGGCTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGGTCTACAGGAGGCTGGTGTCTAGTGAACACAGGTTGGGTCCTCCTCAGGAGGCTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCAGGAGGTTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGGTCTTCAGGAGGCTGATGTCTAGTGAACACAGGTTGGGTCCTCCGATGGAGTTGAGCTCTGCACTGCCCAGAGTATTTCCTGAGTTCCTCAGGTACTTACTGATGATGGCCTGCAC
>TU1296048
CTATGTATGGCTGTGTTAGCTGGTAGGAGGTAGCAGAGACAGTACTGCGGCTCTGGAAGGCTCCTTCAGCGATGATGAACAGCGTTCTCTTCTTCATTATGTTGCAGTTGGTCACCGTCAGGGCATTGGCCTTACTGCAACACGGTGAAACAGATATCAACCGTCTTACCGTCTGGCATCACACGTCTTACTGTCTGACATCACACGTCAACACAACCGTCTTATTGTCTGACATCACACGTCAACACAACCGTCTGACATCACACACCAACACAACCGTCTTATTGTCTGACATCACACGTCAACACAACCGTCTTATTGTCTGACATCACACATCAACACAACAAGCCTCTGTGGTGTTTCCATGGTaacggggggaggggaggagcctCTGTGGTGTTCCCACGGTAACGCTGGGGAGGGGAGGAGCCTCTGTGGCGTTTCCACGGTAacgggggggaggggaggagcctCTGTCTCTTCGGTTTGGCTCTCCTCTGTAGTCATGGCCTTCAGGATGGTGGCAAGCTAGTGTTAGCATAGCGGCTAAGTGTTACATGTTTTCCTATGAAAAATGTTGGCCCTGTTACCCACATCTTAGTAATAAAGGTAACAGTTATTACTATTACATTACTGTGTTATAGGCTACAGGAGGCTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGGTCTACAGGAGGCTGGTGTCTAGTGAACACAGGTTGGGTCCTCCTCAGGAGGCTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGGTCTACAGGAGGCTGGTGTCTAGTGAACACAGGTTGGGTCCTCCTCAGGAGGCTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGGTCTTCAGGAGGCTGATGTCTAGTGAACACAGGTTGGGTCCTCCGATGGAGTTGAGCTCTGCACTGCCCAGAGTATTTCCTGAGTTCCTCAGGTACTTACTGATGATGGCCTGCAC
>TU1296049
CTATGTATGGCTGTGTTAGCTGGTAGGAGGTAGCAGAGACAGTACTGCGGCTCTGGAAGGCTCCTTCAGCGATGATGAACAGCGTTCTCTTCTTCATTATGTTGCAGTTGGTCACCGTCAGGGCATTGGCCTTACTGCAACACGGTGAAACAGATATCAACCGTCTTACCGTCTGGCATCACACGTCTTACTGTCTGACATCACACGTCAACACAACCGTCTTATTGTCTGACATCACACGTCAACACAACCGTCTGACATCACACACCAACACAACCGTCTTATTGTCTGACATCACACGTCAACACAACCGTCTTATTGTCTGACATCACACATCAACACAACAAGCCTCTGTGGTGTTTCCATGGTaacggggggaggggaggagcctCTGTGGTGTTCCCACGGTAACGCTGGGGAGGGGAGGAGCCTCTGTGGCGTTTCCACGGTAacgggggggaggggaggagcctCTGTCTCTTCGGTTTGGCTCTCCTCTGTAGTCATGGCCTTCAGGATGGTGGCAAGCTAGTGTTAGCATAGCGGCTAAGTGTTACATGTTTTCCTATGAAAAATGTTGGCCCTGTTACCCACATCTTAGTAATAAAGGTAACAGTTATTACTATTACATTACTGTGTTATAGGCTACAGGAGGCTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGGTCTACAGGAGGCTGGTGTCTAGTGAACACAGGTTGGGTCCTCCTCAGGAGGCTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGGTCTACAGGAGGCTGGTGTCTAGTGAACACAGGTTGGGTCCTCCTCAGGAGGCTGGTGTCTAGTGAACACAGGTTGGGTACTCCTCAGGAGGCTGGTGTCTAGTGAACACAGGTTGGGTCCTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGATCTACAGGAGGCTGGTGTCTAGTGAACACAGGAGGGTCTTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGATCTACAGGAGGCTGGTGTCTAGTGAACACAGGTTGGGTCCTCCTCAGGAGGCTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCAGGAGGTTGGTGTCTAGTGAACACAGGTTGGCTCCTCCTCTCGGTCTTACCTCAGGCTACTCTGTGTAATGGTCTTCAGGAGGCTGATGTCTAGTGAACACAGGTTGGGTCCTCCGATGGAGTTGAGCTCTGCACTGCCCAGAGTATTTCCTGAGTTCCTCAGGTACTTACTGATGATGGCCTGCAC

Function

NR:

description
mesothelin-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1296047 False 1136 lncRNA 0.51 3 3334109 3335671
TU1296048 False 1070 lncRNA 0.51 4 3334109 3335671
TU1296049 True 1343 lncRNA 0.52 3 3334109 3335671

Neighbor

gene id symbol gene type direction distance location
LOC110514041 LOC106585204 coding downstream 136127 3161191 ~ 3197982 (-)
LOC118938425 NA coding downstream 171794 3161646 ~ 3162575 (-)
LOC110493360 LOC106564102 coding downstream 175271 3133003 ~ 3158838 (-)
LOC110514903 LOC106594799 coding downstream 366322 2941965 ~ 2967787 (-)
LOC110493365 LOC106564074 coding downstream 537807 2789766 ~ 2796302 (-)
LOC110519358 LOC106564100 coding upstream 3357 3337677 ~ 3341727 (-)
LOC118938390 LOC106585183 coding upstream 17495 3353166 ~ 3370727 (-)
LOC118938420 NA coding upstream 46621 3382292 ~ 3385041 (-)
LOC110487344 LOC106594449 coding upstream 52130 3387801 ~ 3406583 (-)
LOC110487174 LOC106594426 coding upstream 78351 3414022 ~ 3420121 (-)
G1137394 NA non-coding downstream 51801 3258727 ~ 3282308 (-)
G1137401 NA non-coding downstream 63194 3270143 ~ 3270915 (-)
G1137389 NA non-coding downstream 65083 3253575 ~ 3269026 (-)
G1137395 NA non-coding downstream 65861 3260412 ~ 3268248 (-)
G1137388 NA non-coding downstream 73939 3252940 ~ 3260170 (-)
G1137412 NA non-coding upstream 30752 3366423 ~ 3366908 (-)
G1137404 LOC106564108 non-coding upstream 46592 3382263 ~ 3394105 (-)
G1137444 NA non-coding upstream 59705 3395376 ~ 3395622 (-)
G1137461 NA non-coding upstream 104768 3440439 ~ 3447354 (-)
G1137174 NA other downstream 203556 3129613 ~ 3130553 (-)
G1136948 NA other downstream 474068 2859031 ~ 2860041 (-)
G1136568 NA other downstream 811748 2521827 ~ 2522361 (-)
LOC118938509 LOC106564044 other downstream 819191 2507219 ~ 2518648 (-)
LOC110487308 LOC106595461 other upstream 192768 3521685 ~ 3532141 (-)
G1137666 NA other upstream 395950 3731621 ~ 3733300 (-)
G1137672 LOC106595836 other upstream 429611 3765282 ~ 3765816 (-)
G1138151 LOC106606801 other upstream 1059074 4394745 ~ 4421260 (-)
G1138232 NA other upstream 1283824 4619495 ~ 4620179 (-)

Expression


Co-expression Network