G1138151 (LOC106606801)


Basic Information

Item Value
gene id G1138151
gene name LOC106606801
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4394745 ~ 4421260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1297095
TGTGTGTTTATGTTCACATGTTAAAGAGAAAGAAGAAGTTTATACTCACTTATAACAAGCAGCTTCACCTGTGTGATCAGTGTAATGTAACGTTGTTCTGTCCTGCTGGTTTCTACTCCACACCAGTAGGTCCCTTCATCTTGTCTGGTCAGTTGTCTGATGATCACCTTGAAGTAGTTTCCTCTAGTGTTGTCATACAGAGAGAATCTACCACTGTGCTTCCAGGTGTTAATCAATCCAGTTCTGATTTGATCCTTACAACTCAAACTATACTTCCCCAAGCAGAAATATTTGTCATGACTTCTGTCTTCTGTGGAATAATGACAGGAGATGATGACAGTTCCTCCAGAGTATCCTGTCACTTTGAAGGAGCTCAAACA
>TU1297096
TGTGTGTTTATGTTCACATGTTAAAGAGAAAGAAGAAGTTTATACTCACTTATAACAAGCAGCTTCACCTGTGTGATCAGTGTAATGTAACGTTGTTCTGTCCTGCTGGTTTCTACTCCACACCAGTAGGTCCCAGTATCATCTTCAGTCAGGTCACTGATGGTCACTGTAGAgaatctctctcttcttctcttagAAAGAGAATATCTTCTAGGTTTTTCATGATATGTATCTGATATCTTGTTTTCACAGTCAGATTCACTGTCTTCTTTGCAGAAATACTTGATGTTGTCCTCATGGTCCTCTGGATAGTTACATCTGATGGTAGCTTCTCCTCCCAGAAAGGCCGTCTCTGTGACTGACTTCTCACAGCAGTCATCTGTCA

Function

NR:

description
CMRF35-like molecule 8, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1297095 False 380 TUCP 0.41 3 4394745 4421260
TU1297096 True 385 lncRNA 0.41 2 4395521 4421260

Neighbor

gene id symbol gene type direction distance location
LOC110519427 LOC106592376 coding downstream 57861 4325772 ~ 4337660 (-)
LOC118938151 LOC106592341 coding downstream 74242 4313122 ~ 4321279 (-)
LOC110485404 LOC106591939 coding downstream 83084 4293455 ~ 4312437 (-)
LOC110493382 LOC106564272 coding downstream 112324 4271881 ~ 4283197 (-)
rtnanos3 rtnanos3 coding downstream 124094 4269699 ~ 4271427 (-)
LOC118936518 LOC106606801 coding upstream 185094 4606354 ~ 4612954 (-)
LOC118938535 LOC106591275 coding upstream 198962 4620222 ~ 4622987 (-)
LOC118938536 NA coding upstream 315953 4737213 ~ 4741711 (-)
LOC118938155 LOC106564258 coding upstream 333818 4755078 ~ 4767260 (-)
LOC118936519 LOC106564260 coding upstream 349419 4770679 ~ 4796554 (-)
G1138140 NA non-coding downstream 26633 4368094 ~ 4368888 (-)
G1138117 NA non-coding downstream 78525 4316334 ~ 4316996 (-)
G1138116 NA non-coding downstream 88792 4306112 ~ 4306729 (-)
G1138008 NA non-coding downstream 104112 4291073 ~ 4291409 (-)
G1138152 NA non-coding upstream 6129 4427389 ~ 4434767 (-)
G1138176 NA non-coding upstream 20537 4441797 ~ 4442112 (-)
G1138186 NA non-coding upstream 77398 4498658 ~ 4499488 (-)
G1138221 NA non-coding upstream 166241 4587501 ~ 4588191 (-)
G1138225 NA non-coding upstream 180569 4601829 ~ 4602316 (-)
G1137672 LOC106595836 other downstream 629705 3765282 ~ 3765816 (-)
G1137666 NA other downstream 662221 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 863397 3521685 ~ 3532141 (-)
LOC110514041 LOC106585204 other downstream 1207337 3161191 ~ 3197982 (-)
G1137174 NA other downstream 1264968 3129613 ~ 3130553 (-)
G1138232 NA other upstream 198235 4619495 ~ 4620179 (-)
G1138568 NA other upstream 736905 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 779795 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 796431 5216411 ~ 5244441 (-)
LOC118938515 LOC106592948 other upstream 1250200 5671437 ~ 5678473 (-)

Expression


Co-expression Network