G1138601


Basic Information

Item Value
gene id G1138601
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5065871 ~ 5071930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1297713
TTCATGAGTAACAGGTTCAGACCCATATCAGGACTGACTTCACAGAAGTACTGTAGGTTAACACTGGTGATGAATATGAGGGTTTCATCTCTCTTTAAAAATAATCAATATATTCTCTGTTTCTTATCTCTTTATTGGGCTTTTATTCAGTTCCAAATTATTCATAATTAAAGTTGGATAAATGCATCAAGAAACAAGACCAAGACTTAAGCCCTTCTATCTATACATGTTCAAATTGTTTTATCCTCCAAATGTCTTTATAAAAGTAGATCCATAGCCTACACATGGTGTCTCCCAGTGAATCAGGGGCTCCACCAGTTCCTAACCAGTCCTGTTGTAAACCATATCACTGCCCCTGTCAACCCTCCCATGACAACACCTCCAAAACCACCTGTCAGAACCCCCATCAACAACCCCGTCCCTATGGCGACGAAGAGCTCCAATCTGTCACCGACGATTCTCTGCCTGTCCTCCTTCCTCCACTGGTATCTGTAgcgctccctctcctccacctcattGGTCCGCACCACTGTAGGTTTCTGGAAAACAGCAGTGCTCTGTGCAGCTCTGACCAGTTCATTTCTGTAGCATGCCTCGATTTGGACTCTATCTCCCATGATCCTTCGCTGATACTCCTCTGGCTTCTCCCTAGAGAGACTGGCTGATGAGGTGGGAAATGTAGTCATTGGACTTTGTTCTGTTATGTAACATTCTCCACATTGGAGTCAGACCTGAGCAAGGCACTGGTACATAGAGACACTATTTACTAATCACTGGTATATAGATACACCATCTTCTAATCACTGGTACATAGATACACCATCTACTAATCACTGGTACATAGACACACTATCTACTAATCACTGGTACATAGAGATACTATCTACTAATCACTGGTACATAGAGACACTATCTACTAATCACCGGTACAtagacacactaactactaaTAACTGGTACATAGAGATACTATCTACTAATCACTGGTACATAGAGACAGTATCTACTAATCACTGTCAATTCCAAACAACTACCCATTATCATGTGATCATTACTCGTTAAGACCAGAATCTATACAGCAGTTTTATGTTTCATGGGTTATTGAAGCAATcaggcccaagggggtgtggtatctATATcaggcagatgttattgcaggtgttcctaactccaacagtgcattaatatctaacaattcacaacaatacacacaaatctaaaagtaaaagaaaggaattaagaaatCTATAAATATATTTCtgaatgtgtattttaatgatgtAATCAACCTGGCTACTACAGTTATTGGAATAAACAGGAAAGCACAGGTGAGTGTCAACAGGCACTACAACAGGATATTTTAGGATTTATCAATGTTTAGTTTAACGAAGTAAGGAAATCAAGAATAGCTCAGAACTTACTCCGACTCACTTCCATCTCAACTCAGCCGGGGTTAAGGAGACTCTCACGACACGTGATGTTATCACACCCCACTGAGGAAGTTATGAATCAAATATTGCTGAAAGAGCGAATCACAAATTGTCAGGTGAACCGTCACATGTAGACTACAAGTCtaaggaccaaaaggctccttaacagcttctacccccgagccataagtctgctgaacaattaatcacatGGCCACCAAACTATTtactttgacccccccccctccactccatttgtttttgtacactgctgctactctctgtttattatctacacatagtcacttcacccccacctacatgtactctgctgctactcgctgtgtaTTATCTacacatagtcacttcacccctacctacatgtacaaatgacctccactaacctgtacccctccacattgactcggtaccggtaccccctgtatatagcctccacattgactcggtaccggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtaccacctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtactggtacaatgttactttttattattatttgctTTAGTTTATTTGTTAAATATTCTCTTAacttttcttgaactgcactgttggttaaggtcagtaagcatttcacggtaaggtctacacttgttgtattcagcatatgtgacaaatagtttgatttgattacaCACATCCTAGACTCTATCAGGTGGACCATGAATGGAATGTTATGATATCTGTACATTATAGGAACACCTGTAATTAGAAAAGTACAATGATTgatgttttgctttatcttgagaCCGAGAATCAATGGTAGAGAGTTTGTAAGTGCATGAAGAGGTCAACGGTACAAAAGTCAGATGTCTGTGTGTTGAAACTACATTTTCAGTTCCTGTTGATAATATGTTCCAGTCTTACTTCTACAATAGGAGGAAGAAGGATTGAGAAACTAACTGCAAATAACAATGAGCTGAACTCCACCTAGCCGAGACTTCTTTGTATTAGCAACTATTAATTATGAGGTTATActacagggcctcccgggtggcgcagtggttaaagggccaccagagactctgggttcgcgcccagcctctgtcgtaaccggccgcgaccgggaggtccgtggggcgacacacaattggcctagcgtcgtccgggttagggagggattgatctgtagggatctccttgtctcatcgcgcaccagcgactcctgtggcgggccgggcgcagtgcgcgctagccaaggttgccaggtgtactgtgtttcctctgacacattggtgcggctggcttccgggttggatgcgcgctgtgttaagaagcagtgcggcttggttgggttgtgtatcggaggactttcaaccttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactaacaattggataccacgaaattggggagaaaaaggggtaaaattcaaaataataataataaataaataaaatatatgctACTACAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1297713 True 3164 lncRNA 0.43 2 5065871 5071930

Neighbor

gene id symbol gene type direction distance location
LOC110513280 LOC106564244 coding downstream 4352 5058451 ~ 5061519 (-)
LOC110513279 LOC105029740 coding downstream 10766 5028078 ~ 5055105 (-)
gcgrb LOC106591591 coding downstream 65080 4943129 ~ 5000791 (-)
LOC110510582 LOC106592158 coding downstream 227863 4814745 ~ 4838008 (-)
LOC110493400 as1la coding downstream 258248 4797759 ~ 4807623 (-)
LOC110485437 NA coding upstream 20685 5092615 ~ 5094443 (-)
LOC118938158 LOC106592452 coding upstream 40901 5112831 ~ 5115196 (-)
LOC110485443 LOC106592430 coding upstream 56294 5128224 ~ 5141579 (-)
LOC110485440 LOC106597237 coding upstream 66654 5138584 ~ 5141623 (-)
LOC118938159 LOC106592320 coding upstream 77310 5149240 ~ 5155100 (-)
G1138607 NA non-coding downstream 866 5064561 ~ 5065005 (-)
G1138598 NA non-coding downstream 20946 5041521 ~ 5044925 (-)
G1138599 NA non-coding downstream 23372 5041931 ~ 5042499 (-)
G1138554 NA non-coding downstream 38105 5026006 ~ 5027766 (-)
G1138558 NA non-coding downstream 42941 5022616 ~ 5022930 (-)
G1138609 NA non-coding upstream 1521 5073451 ~ 5073730 (-)
G1138610 NA non-coding upstream 2601 5074531 ~ 5074974 (-)
G1138611 NA non-coding upstream 4638 5076568 ~ 5077162 (-)
G1138612 NA non-coding upstream 10117 5082047 ~ 5084534 (-)
G1138564 NA non-coding upstream 12995 5084925 ~ 5174499 (-)
G1138232 NA other downstream 446007 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 644611 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1300055 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1332571 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 1533747 3521685 ~ 3532141 (-)
G1138568 NA other upstream 86235 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 129125 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 145761 5216411 ~ 5244441 (-)
LOC118938515 LOC106592948 other upstream 599530 5671437 ~ 5678473 (-)
LOC110512654 LOC106592307 other upstream 972927 6044857 ~ 6058622 (-)

Expression


Co-expression Network