G1138566


Basic Information

Item Value
gene id G1138566
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5112352 ~ 5124824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1297675
agggttctacatggaacccagaagagttctacctggaacctaaagGGTTATACGTGTAACGTTACCTGGAATCAGAAAGggatcttcaaagggttctcctatggggacagccaaataaccattttacgttctagatagcacctttttttcataACAATTATGTAAATATGTTACATTCATCAATCAAGATCTCACCTCTTTGGTTGAAGGACTGAAGAAATTCCCGGCACCATATTGGCGTCAAATGGTATTTTATGTCCTCCGGTTGAACATATTCAAGGTCTTTTAATATTCTCCACTACAACATTCGTAACCTTCTGCGCAAAGTGTTTTCTGCTAGTCAAAACCGGCAGAGCTGCCCtgagaacagtcttggtttcatctATGAGATtcagctgtctttctctctctcacacacacacacacacacacacacaccacagaccgtTTGGCGCCGCCAACTACAGCAGTGTTCGGGTACTACTGTAAAGAAATACAGTACGTTAGAGTAATTTTTACCGGAGGCTTACATTTACAGTTAACAACAGTAGAATTTTACCCATGATGcggcagggtatcctagtggttagagcgttggactagtaaccgaaaggttacaagatcaaatccccgagctgacaaggtaaaaaatctgttgttctgcccctgaacaaggccgttaacccactgttcctaggccgtcattgaaaataataatttgttcttaactcacttgcctagttagataaagtttttttttttaaagaaataaaTGCAGTGCAATCTACAGCATTAATGCTGTAAAAACACATTTAAGATATTTGACTGTGCATTctacagtgttttactgttgaaATTACACAACAGTCTTACAGTGTTCATGTTTTCTACCGTTTACTAAACcactactgatttagaaccagGAAGTTACCTCAAGTcaacacaaagacaacaggaACACCGCCTCCGCTAATTCCAGCACCATTTTAACTTAAACATTTAAATATCATCAAATCAAGAAAGCTACATCTGCATAGTTTAATACACAGAAAACACACtttaaagataccaaaaacaatttagtccaatcaatgttgctAAATATCACGTGGCTTCCCTTGGTACTGATTTCTGTCTGTGTGCACAAGTAAAACGAAACATGTTGACTCGCCCTACTTGTTGACTAGTTGAAGGCCAacgccatcctcctctctttcatgttggctaaacggtctatgactctgtcatacagtacacctttCATtctttgttgtcctaggctacctagctaaaatgcttgctagctTAAATTCCTCACGTTggcaacaatgaaccagctaagttagctagctagttaaagtGAGCCTACTAGGCTACATCTAGGCTAAGATAGAACTTCAATATtctcaggccagtggcacaacatattaatttatggttagatcagaatGCTGTCATAATCATTGACCTGTGTTAgagttgcgtcaattcgaatctggtatcaggataaatatgacaatgagtcaccgattgtatgctatgtattttttattagctaagcaataattggtaaatgcaattttcgtatatacgggctctctgtcccacctcgcaggacAAACAGAGAACTAGCTTGTTCTTGAcaaatatattataaatatactctgacagaaaaagttcctgcttccgagccggcctgtcagagtagagactgggcgtggtttagatTCACCCAGCCCATCGTTGATTGTTGGTgcagaggctggtcccagccccctaagcgcttcagcggtcagtcgctgtagctgtgtagaatatgcagttgtgtagaatatgcagttttcaggcacctggctcctgttatctaacaaaatacAGTTTGTTCTCGCAACCCCACgctctgaatgtgcccccccccaactcattctgtatttttccaccatgagaaaggcccatggccctgaaacggttaacaatgtttcaagtcagctatgttgcctaacacatacatacatccacacaagccaacagcagataatattcaatcacatatatggtaacgggctatagtgcataacacagaatcctcatacctgtacagagaattaagtcaaaactaagtctccatccatggcttaggaaaggggcaagttagccagctagctactgcaggacatcaacacaaacagaccaagttagccagctagctactgcaggacatcaacacaagctagctactgcaggacatcaacacaagctagctactgcaggacatcaacacaagctagctactgcaggacatcaacacaaacaGACCAGAAACACACACGTTTTTAATGAGGATTACCTTTTTCTTAGGATGTGATTTGATTGGTGTATCCCTTGGGGCTGTTTTGCTGCACCAGGACAACCCACATTTCAGCTCAACGCTGATTAGCTAATTATGTTATATCGTTTTTATCAAGAGAGGCTAAATGCTTGCTGGCATCAATCAACTGCTATGGCGGCAACATGTTATATATTCTATTTTGGTCCAGACGGCATCAGACACATCCTGAGACAGAGGGGCGTTTTCCTCGCTCGGATGATTTCTCTGTTGAGATTCAGCCACTTGCAAATGAACGGAAAATTATGTTAACATGGGTGAAAAGTGATTGCATTCGTTTTGGAAGAGGCTGCCTCCTGGGCCTCACTTTCAATAAAAGTGACGAAAGTTATGCACGTAGAGTTAAGAAAGATGCCCCTCCTTTCCCCCTTTTATCCGTTCACGTCACGGGACAAAGCCCGGTGCACCACGGTTCAGGTTAATCAAACTCCCTCAGTGGAGGACTCAGGTAATCAAGAAAATGTAACTGAGATCCTCCTTCAGAAGTGTGGGCCTTTTTGAAACCAGCACCGCCTATTctgtcctccacctccacctccctcttcccctcttctcttcttcctattCCATCCAGCACCTCCATCCGCctttcttctcttccctcttATTCTGTCCAGCACCTCCCTCAGCCTTTCTTCTCTTGCCTCTTATTCTGTCCAGCACCTCCCTCCGCctttcttctcttccctcttATTCTGTCCACCACATTGTTCCGCCTCTCTTCTTTCCATATTCTGTCCACCACCTctgtccccttctcttcccttccaccTATTCTGTCCACCACCTctgtccccttctcttcccttccaccTATTCTGTCCACCACCTctgtccccttctcttcccttccacCTATTCTGTCCACCACCTCTGTCCCCTTGTCTTCTCGTCCACCTATTCTgtccaccacctctctccccttctcttcccttccaccTATTCTGTCCACCACCTCTGTCCCCTTGTCTTCTTGTCCACCTATTCTgtccaccacctctctcctcatctcttcaaCACCATCTACAGGACAATAAGAAATACTGCAGGCCAGTTATGGTTTATTTGTGTGTGCTAATTATGATGCCATATTTttgaaatgtaaaataaaaaaactaaattCTTCAGCTTTTGCTCGTGGGCGTGGAGAGGTGTGGCCCTTTCTATCACATTTCTGGGACCCGATCAAATGAACAGGGTCCCAGAGCTACTGCCTTGAGGAGCAGACAGATAGGGAAGCCCTGGCTACACAGACCAGAGTCTGAGGGACCTTTTCTTGTAAACAAGCTCTTGTTTTAGACACTTCCCCTCTTTCTGGTCTTTTAGAGTTCACTGTAGAGCGTATGTGTGGTCTTATAGAGGTCACTGTAGAGCGTACAGTATATCTGGTCTTTTAGAGTTCACTGTAGAGCGAATGTGTGGTCTTTGTTTAAAAAATGGCCTGCGTCCCAATGTTTAAAACATGTACTCATAATGACTAACAGTATCAAATGCATTTTTGAAATCCAATAGTAGAATTATAGGGTGTCATCTAATGAATCGTTATATTCCATCAAGTCCAAGACCAGCCTGATCATTTCCTTTTAGATTTGACGCTCTTTCAAAAATCCAGATATCTTGCATTTTGCTAGAACGGAAGCTAGTAtattatcttttttttttgtgtaattgGGCTTCAAGTATCAAGAAAGAATGTATCCTCATGTGGTTTAGGGATAAGAGTTATAACACCTTATTTTAATGACGCTGGAAGCTCTCGTTTTTCGATGGCTTTGTTAAATGTGACAAGTAAGAATTAGAGGTTTGCCCATCAGTACCAGAATTAGAGGTTTGCCCATCAGTACCAGGGGATGTGATATTTTTTAACTGTGTGATATCAAATCTGATCTCCTTTGTAGTCAAATCTTCGCAGCAGACTTGATTGAATTCCTCATCAACAGAATTGCCATCAGGAATGGAGCTGAATAATTGATTTGAATTAAATCAGGCAAGAGTCATATTTAGTATCAATTCTTCTAAACGTTTGCAGTGAAGTATAATATTGATTTATTATCCTCAGTGACTATGGCATCAATGTTGAGTCTCCTAACCATATTCAGTTCACATCTTCTCATCAATGTTGAGTCTCCTAACCATATTCAGTTCACATCTTCTCATCAATGTTGAGTCTCCTAACTATATTCAGATGACCTCTTCTCTTTTACAAATTAAATATATACCTGCTGTTCTTTTCTAACCACTGTTTTCTAGATCTTATAAAAGCACCTCTATCTTTAAACGTGACATAGGAGAATATAGGTGGATTGAGACGCACCCAAAGAAAAAAAGTGCAACATCGGAgaatgcagtggattgagacgcatccaaagCAACAAAACAAACATATATGTCCAgtttaaattgagattttttaTGGGGATGTTGGTTTTATGCTAATTTGATTTGCATGGGGCATTGACCTTAAGTTCTCAAATGGAAATAAAAAAAGTGCAATGAATTTAGGAAAATGTAGCCATCAACAATCTGCCGTACAGGAAGTGCACATTGCTAATAGTTAATGTAGGAATCAACTGTCTGCCATACAGGAAGTGCACATTGCTAATAGTTAATGATATCTCTATGATGTGTTTTGTTGTGTACAGAATCGTTGTTAGAGGACGGGACATGGTGCGTCTGTCGGGTGAGTATGTATACTCATGTTTTACCACACTAATCTAGTTCTGAATAGGTTTCTACTCAACGTGCAGTAATTATATTTACGGTTTTAAAATGGAGTTGCAAGGGAAATCGTTACAGTTGTTGTGTGGCTGAGAGAGTAATagttgttgtgTGTGGCTGAGAGAGTAATGTTGATGATTATAACAACACAAATGTacttactctgtctctctctcaccttctcctcctgtctgctcatcctctccttctcctgagagagagagtgagagagagagaaagaaagagaaagaaagaaagaaagaaagagagaaaaatagagagagaattagagagagcatacttaaattcacactgtataagacaggagaagtactccagatataacaaactgaccctagccccccg

Function

NR:

description
PREDICTED: uncharacterized protein LOC106566116

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1297675 True 5470 lncRNA 0.41 8 5112352 5124824

Neighbor

gene id symbol gene type direction distance location
LOC110485437 NA coding downstream 18001 5092615 ~ 5094443 (-)
LOC110513280 LOC106564244 coding downstream 50833 5058451 ~ 5061519 (-)
LOC110513279 LOC105029740 coding downstream 57247 5028078 ~ 5055105 (-)
gcgrb LOC106591591 coding downstream 111561 4943129 ~ 5000791 (-)
LOC110510582 LOC106592158 coding downstream 274344 4814745 ~ 4838008 (-)
LOC110485443 LOC106592430 coding upstream 3400 5128224 ~ 5141579 (-)
LOC110485440 LOC106597237 coding upstream 13760 5138584 ~ 5141623 (-)
LOC118938159 LOC106592320 coding upstream 24416 5149240 ~ 5155100 (-)
LOC118938161 LOC106592320 coding upstream 43505 5168329 ~ 5177917 (-)
LOC118938162 LOC106592646 coding upstream 75655 5200479 ~ 5211509 (-)
G1138612 NA non-coding downstream 27818 5082047 ~ 5084534 (-)
G1138611 NA non-coding downstream 35190 5076568 ~ 5077162 (-)
G1138610 NA non-coding downstream 37378 5074531 ~ 5074974 (-)
G1138609 NA non-coding downstream 38622 5073451 ~ 5073730 (-)
G1138574 NA non-coding upstream 8493 5133317 ~ 5133858 (-)
G1138619 NA non-coding upstream 19773 5144597 ~ 5146150 (-)
G1138620 NA non-coding upstream 21439 5146263 ~ 5146636 (-)
G1138572 NA non-coding upstream 47625 5172449 ~ 5190371 (-)
G1138628 NA non-coding upstream 97932 5222756 ~ 5228090 (-)
G1138232 NA other downstream 492488 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 691092 4394745 ~ 4421260 (-)
G1137672 LOC106595836 other downstream 1346536 3765282 ~ 3765816 (-)
G1137666 NA other downstream 1379052 3731621 ~ 3733300 (-)
LOC110487308 LOC106595461 other downstream 1580228 3521685 ~ 3532141 (-)
G1138568 NA other upstream 33341 5158165 ~ 5162954 (-)
G1138553 LOC106592646 other upstream 76231 5201055 ~ 5262513 (-)
LOC118936520 NA other upstream 92867 5216411 ~ 5244441 (-)
LOC118938515 LOC106592948 other upstream 546636 5671437 ~ 5678473 (-)
LOC110512654 LOC106592307 other upstream 920033 6044857 ~ 6058622 (-)

Expression


Co-expression Network