G1138696


Basic Information

Item Value
gene id G1138696
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5421928 ~ 5423529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1297845
ctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctccatctcagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctccatctcagagtgttagttgaagtggtagtagtcccctcctctcctctccatctctacatctcagagtgttagttgaagtggtagtagtcaactcctctccatctctccatcccagagtgttagttgaagtggtagtagtcaactcctctccatctctccatcccagagtgttagttgaagtggtagtagtcccctcctctccatctctacatctcagagtgttagttgaagtggtagtagtcccctcctctccatctctccatcccagagtgttagttgaagtggtagtagtcaactcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatctcagagtgttagttgaagtggtagtagtcccctcctctccatctctacatctcagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctccatctcagagtgttagttgaagtggtagtagtcccctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcctctccatctctacaactcagagtgttagttgaagtggtagtagtcaactcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcccctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatctcagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatctcagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctccatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatctcagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctccatctcagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcaactcccctcctctccatctctacatcccagagtgttagttgaagtggtagtagtcccctcctctccatctccatctccacatctcagagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1297845 True 1602 lncRNA 0.48 1 5421928 5423529

Neighbor

gene id symbol gene type direction distance location
LOC110485445 LOC106564237 coding downstream 141065 5278946 ~ 5280863 (-)
LOC110516762 LOC106592646 coding downstream 155441 5245446 ~ 5266487 (-)
LOC118936520 NA coding downstream 177487 5216411 ~ 5244441 (-)
LOC118938162 LOC106592646 coding downstream 210419 5200479 ~ 5211509 (-)
LOC118938161 LOC106592320 coding downstream 244011 5168329 ~ 5177917 (-)
LOC110517601 tmed1 coding upstream 161525 5585054 ~ 5595560 (-)
LOC110516670 LOC106592431 coding upstream 203082 5626611 ~ 5629846 (-)
LOC118938515 LOC106592948 coding upstream 247908 5671437 ~ 5678473 (-)
LOC110487505 LOC106593267 coding upstream 255635 5679164 ~ 5756340 (-)
LOC110485432 LOC106593320 coding upstream 333204 5756733 ~ 5783389 (-)
G1138706 NA non-coding downstream 33096 5388566 ~ 5388832 (-)
G1138704 NA non-coding downstream 43062 5377808 ~ 5378866 (-)
G1138700 NA non-coding downstream 55990 5365675 ~ 5365938 (-)
G1138691 NA non-coding downstream 62428 5357492 ~ 5359500 (-)
G1138664 NA non-coding downstream 78850 5342648 ~ 5343078 (-)
G1138692 NA non-coding upstream 3461 5426990 ~ 5427341 (-)
G1138698 NA non-coding upstream 3993 5427522 ~ 5428065 (-)
G1138694 NA non-coding upstream 7161 5430690 ~ 5431386 (-)
G1138688 LOC106564208 non-coding upstream 8144 5431673 ~ 5457057 (-)
G1138693 LOC106592549 non-coding upstream 16731 5440260 ~ 5441148 (-)
G1138553 LOC106592646 other downstream 159415 5201055 ~ 5262513 (-)
G1138568 NA other downstream 258974 5158165 ~ 5162954 (-)
G1138232 NA other downstream 802064 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 1000668 4394745 ~ 4421260 (-)
LOC110512654 LOC106592307 other upstream 621328 6044857 ~ 6058622 (-)
G1139916 NA other upstream 668830 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 1182790 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 1274853 6698319 ~ 6717102 (-)

Expression


Co-expression Network