G1139797


Basic Information

Item Value
gene id G1139797
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5661404 ~ 5664528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1299371
TTTGGATATATGTAGTAGAAAATACTAATAGTACCGTGTTAGTGGTGAATCATTTGGATATATGTAGTAGAAAATACTAATAGTACCGTGTTAGTGGtgatatataaatattatatgTACAAATAATTGTAAGGATAATTAGCAGCTTTGGCTAGAAGAGCCACACTAATGTCGGGATTCAATCCCATGGTGCTTTGTCAACAACGCACCATTGAAACCTTTCCGATTGAACCGACATGCAGCGAGGAATGTGGTCTCCCCGAAAGGTGCTGACTTTGCCTATGAATGACGTTAATGGCGTTGTTGACGAAGCGCAGTCAGATGGAATCGGGGACTAACATAGTGATCTGGTTTAGTACAGGTCGACTTTAATTAAAGGGGCAATGCAGGATTCAAAAGAACAACAAAGCTCCGTTGTCATTCGCTAAGAAGTCAAAAAACAGATGTGGACCGACCAATCCCAGATCAGGATTATTTACATACATAGTTTGTGTGGCACTAACATGGATTTACATATTCCATTACCAGGCACTTTTTATCCACATCAACTTTCAGTCAGTCAATCATTTTTACATATGGGGAggccccaggaatcaaacccacaatcctggtgTTGTaaatgccatgctctaccaactgaaccactgAGGAcaggttctaccaactgagtcacagaggacaggttctaccaactgagttacagaggacagGTTCTACCATATAACTACATTTTTAGATATGCTAACatctcctctcattctgtctctctcactttttctttccctccctccaactgtctccccctctttttctctccctctctcccacacctctctcagtctctttctctcccactatccccccctttctctctccctctctcccacacctctctcggtcactttctctcccactatgcccccctctctctctccctctctcccacacctctctctgtctttttctctcccactatccccccctttctctctccctctcc
>TU1299372
TTTGGATATATGTAGTAGAAAATACTAATAGTACCGTGTTAGTGGTGAATCATTTGGATATATGTAGTAGAAAATACTAATAGTACCGTGTTAGTGGtgatatataaatattatatgTACAAATAATTGTAAGGATAATTAGCAGCTTTGGCTAGAAGAGCCACACTAATGTCGGGATTCAATCCCATGGTGCTTTGTCAACAACGCACCATTGAAACCTTTCCGATTGAACCGACATGCAGCGAGGAATGTGGTCTCCCCGAAAGGTGCTGACTTTGCCTATGAATGACGTTAATGGCGTTGTTGACGAAGCGCAGTCAGATGGAATCGGGGACTAACATAGTGATCTGGTTTAGTACAGGTCGACTTTAATTAAAGGGGCAATGCAGGATTCAAAAGAACAACAAAGCTCCGTTGTCATTCGCTAAGAAGTCAAAAAACAGATGTGGACCGACCAATCCCAGATCAGGATTATTTACATACATAGTTTGTGTGGCACTAACATGGATTTACATATTCCATTACCAGGCACTTTTTATCCACATCAACTTTCAGTCAGTCAATCATTTTTACATATGGGGAggccccaggaatcaaacccacaatcctggtgTTGTaaatgccatgctctaccaactgaaccactgAGGAcaggctctaccaactgaaccactgAGGAcaggctctaccaactgaaccactgAGGAcaggctctaccaactgaaccactgaggacaggttctaccaactgagccacagaggacaggttctaccaactgagtccacagaggacaggttctaccaactgagttacagaggacaggttctaccaactgagcccacagaggacaggttctaccaactgagtccacagaggacaggttctaccaactgagttacagaggacagGTTCTACCATATAACTACATTTTTAGATATGCTAACatctcctctcattctgtctctctcactttttctttccctccctccaactgtctccccctctttttctctccctctctcccacacctctctcagtctctttctctcccactatccccccctttctctctccctctctcccacacctctctcggtcactttctctcccactatgcccccctctctctctccctctctcccacacctctctctgtctttttctctcccactatccccccctttctctctccctctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1299371 False 1000 lncRNA 0.44 3 5661404 5664528
TU1299372 True 1199 lncRNA 0.45 2 5661404 5664528

Neighbor

gene id symbol gene type direction distance location
LOC110516670 LOC106592431 coding downstream 31558 5626611 ~ 5629846 (-)
LOC110517601 tmed1 coding downstream 65844 5585054 ~ 5595560 (-)
LOC110485445 LOC106564237 coding downstream 380541 5278946 ~ 5280863 (-)
LOC110516762 LOC106592646 coding downstream 394917 5245446 ~ 5266487 (-)
LOC118936520 NA coding downstream 416963 5216411 ~ 5244441 (-)
LOC118938515 LOC106592948 coding upstream 6909 5671437 ~ 5678473 (-)
LOC110487505 LOC106593267 coding upstream 14636 5679164 ~ 5756340 (-)
LOC110485432 LOC106593320 coding upstream 92205 5756733 ~ 5783389 (-)
nxnl1 LOC106592756 coding upstream 129781 5794309 ~ 5799274 (-)
LOC110519495 LOC106566240 coding upstream 163872 5828400 ~ 6076863 (-)
G1139770 NA non-coding downstream 189 5660256 ~ 5661215 (-)
G1139791 NA non-coding downstream 16361 5644743 ~ 5645043 (-)
G1139790 NA non-coding downstream 17444 5643745 ~ 5643960 (-)
G1139785 NA non-coding downstream 37081 5624122 ~ 5624323 (-)
G1139768 NA non-coding downstream 73940 5586559 ~ 5587464 (-)
G1139798 NA non-coding upstream 488 5665016 ~ 5665341 (-)
G1139740 NA non-coding upstream 2791 5667319 ~ 5667734 (-)
G1139736 NA non-coding upstream 3474 5668002 ~ 5668845 (-)
G1139748 NA non-coding upstream 4556 5669084 ~ 5669361 (-)
G1139746 NA non-coding upstream 5342 5669870 ~ 5671286 (-)
G1138553 LOC106592646 other downstream 398891 5201055 ~ 5262513 (-)
G1138568 NA other downstream 498450 5158165 ~ 5162954 (-)
G1138232 NA other downstream 1041540 4619495 ~ 4620179 (-)
G1138151 LOC106606801 other downstream 1240144 4394745 ~ 4421260 (-)
LOC110512654 LOC106592307 other upstream 380329 6044857 ~ 6058622 (-)
G1139916 NA other upstream 427831 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 941791 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 1033854 6698319 ~ 6717102 (-)

Expression


Co-expression Network