G1139840


Basic Information

Item Value
gene id G1139840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5823040 ~ 5824694 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1299423
AGTTAAGTCACTGTTCCCCactcggccgtcattgtaaataataatttgttcctaactgacttgcctagttaaaacatgttttttaatcACTCAAACAGTGTCATTCTTTATTTGTTCTTTATTCAAAACACATTACACTGGGAGAACAGATGCTTCATTACCTTTACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAAGATTACGTCCACTATGATACACTATGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATGATACACTGTGTATTACAACATTACCTCTACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCTACTATAATACACGGTGTGTTACAACATTACCTCCACTATAATACACTGTGTATTTCAACATTATCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATCACAACATTACCTCCACTATAATACACTGTATATTACAACATTACCTCCACTACAATACACTGTGTATTACAGCATTACCTCTATTATAATACAATGTGTATTACATTACCTCCACTATGATACACTGTGTATTACAACATTACACAGAAATGCTTGTAAGAGATCTCAAATATAGTGTGTTAGGTGATCTAGTCAATGACAGCATCTATGAGATCTAGATACGAGATCTAGTCTGTGGAGGTAGGAGATCTAGTCTGTGGAGGTAGGGGATCTAGTCAACGGAGGTAGGGGATCTAGTCTGTGGAGGTAGGAGATCTAGTCAACGGAGGTAGGGGATCTAGTCTGTGGAGGTAGGAGATCTAGTCTGTGTTGGGTGATCTGGGCTGACCTGCGGGGCAACTTGATCTCTGTGTTGTTGCTTGTGGATCTCTCAGTGGATCACTCAGTGGATCTCTCAGTGGATCTCTCAGTGGATCACTCAGTGGATCCTGTCCTCCTGACCTGGACTAGCGGCCTATCCTTCGTGATGTGGTAGCTTCCATTGGATCTGGTGTTTTTGATCTGCTTCTGAACAGTGGATCCAGTCTGTGGGATATTTCCGTTTCCGGTGGATTTAGTCTTTGGGATCCGGCCCATCCTTTGAGCGGATCCGGTGTTTGACGTTTTGTCAGGGGATCTTGTCTCTTGGTTCTGGTCAGTGGTTGAGATCTTGGGAGATCCGGTCATTGGGATCTGGGCTCCGACAGGGGATCCGGTTTCTGTCAGCTTGCTGTCGTCAGTGGATCTAGTCTCGGTATCCTCTCCCTCATTGGATGATCCGTCGTGTGGGATCTGGTCTCCATCGTCATCCCCAGGGATAGGGTCTAGCTCTacctccacacacactctctggggTAACACCACTAGCCAGCACTTAGAACAGCTGCTCTCGAAGTACGGATACAGCGTCTCTGTGAAGCGGTGCGTGAAGGTGAACAGGAGTTTGTCCCTCATCGCATCCCAGAATTCCACCTGACCCTCCTCCCAGTCCAGAAACACCT
>TU1299425
AGTTAAGTCACTGTTCCCCactcggccgtcattgtaaataataatttgttcctaactgacttgcctagttaaaacatgttttttaatcACTCAAACAGTGTCATTCTTTATTTGTTCTTTATTCAAAACACATTACACTGGGAGAACAGATGCTTCATTACCTTTACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAAGATTACGTCCACTATGATACACTATGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATGATACACTGTGTATTACAACATTACCTCTACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCTACTATAATACACGGTGTGTTACAACATTACCTCCACTATAATACACTGTGTATTTCAACATTATCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATCACAACATTACCTCCACTATAATACACTGTATATTACAACATTACCTCCACTACAATACACTGTGTATTACAGCATTACCTCTATTATAATACAATGTGTATTACATTACCTCCACTATGATACACTGTGTATTACAACATTACACAGAAATGCTTGTAAGAGATCTCAAATATAGTGTGTTAGGTGATCTAGTCAATGACAGCATCTATGAGATCTAGATACGAGATCTAGTCTGTGGAGGTAGGAGATCTAGTCTGTGGAGGTAGGGGATCTAGTCAACGGAGGTAGGGGATCTAGTCAACGGAGGTAGGGGATCTAGTCTGTGGAGGTAGGAGATCTAGTCTGTGTTGGGTGATCTGGGCTGACCTGCGGGGCAACTTGATCTCTGTGTTGTTGCTTGTGGATCTCTCAGTGGATCACTCAGTGGATCTCTCAGTGGATCTCTCAGTGGATCACTCAGTGGATCCTGTCCTCCTGACCTGGACTAGCGGCCTATCCTTCGTGATGTGGTAGCTTCCATTGGATCTGGTGTTTTTGATCTGCTTCTGAACAGTGGATCCAGTCTGTGGGATATTTCCGTTTCCGGTGGATTTAGTCTTTGGGATCCGGCCCATCCTTTGAGCGGATCCGGTGTTTGACGTTTTGTCAGGGGATCTTGTCTCTTGGTTCTGGTCAGTGGTTGAGATCTTGGGAGATCCGGTCATTGGGATCTGGGCTCCGACAGGGGATCCGGTTTCTGTCAGCTTGCTGTCGTCAGTGGATCTAGTCTCGGTATCCTCTCCCTCATTGGATGATCCGTCGTGTGGGATCTGGTCTCCATCGTCATCCCCAGGGATAGGGTCTAGCTCTacctccacacacactctctggggTAACACCACTAGCCAGCACTTAGAACAGCTGCTCTCGAAGTACGGATACAGCGTCTCTGTGAAGCGGTGCGTGAAGGTGAACAGGAGTTTGTCCCTCATCGCATCCCAGAATTCCACCTGACCCTCCTCCCAGTCCAGAAACACCT

Function

NR:

description
butyrophilin subfamily 3 member A3-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1299423 False 1633 lncRNA 0.43 2 5823040 5824694
TU1299425 True 1611 lncRNA 0.43 2 5823040 5824694

Neighbor

gene id symbol gene type direction distance location
nxnl1 LOC106592756 coding downstream 23766 5794309 ~ 5799274 (-)
LOC110485432 LOC106593320 coding downstream 39651 5756733 ~ 5783389 (-)
LOC110487505 LOC106593267 coding downstream 67221 5679164 ~ 5756340 (-)
LOC118938515 LOC106592948 coding downstream 144567 5671437 ~ 5678473 (-)
LOC110516670 LOC106592431 coding downstream 193194 5626611 ~ 5629846 (-)
LOC110519495 LOC106566240 coding upstream 3706 5828400 ~ 6076863 (-)
LOC110516892 LOC106585402 coding upstream 188465 6013159 ~ 6033506 (-)
LOC110512397 LOC106592307 coding upstream 209664 6034358 ~ 6132682 (-)
LOC110512654 LOC106592307 coding upstream 221102 6044857 ~ 6058622 (-)
LOC110512959 LOC106592278 coding upstream 327503 6152197 ~ 6167475 (-)
G1139829 NA non-coding downstream 20174 5802655 ~ 5802866 (-)
G1139823 NA non-coding downstream 55063 5767237 ~ 5767977 (-)
G1139818 NA non-coding downstream 75873 5745674 ~ 5747167 (-)
G1139746 NA non-coding downstream 151754 5669870 ~ 5671286 (-)
G1139846 NA non-coding upstream 58571 5883265 ~ 6013720 (-)
G1139887 NA non-coding upstream 144019 5968713 ~ 6017737 (-)
G1139888 NA non-coding upstream 145123 5969817 ~ 6019166 (-)
G1139890 NA non-coding upstream 170547 5995241 ~ 5996066 (-)
G1138553 LOC106592646 other downstream 560527 5201055 ~ 5262513 (-)
LOC118936520 NA other downstream 578636 5216411 ~ 5244441 (-)
G1138568 NA other downstream 660086 5158165 ~ 5162954 (-)
G1138232 NA other downstream 1203176 4619495 ~ 4620179 (-)
G1139916 NA other upstream 267665 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 781625 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 873688 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 954554 6779248 ~ 6831814 (-)

Expression


Co-expression Network