G1139846


Basic Information

Item Value
gene id G1139846
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5883265 ~ 6013720 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1299444
AAGAATATTGGTGGTAATAATTTGTCATACAGTAAATAGTTTGTCTGGTTTCAGGCTTTTAATTTCGAAAAATGACGTTTTAAAGCCATTTGAACAATTATAACAATTTTAACAATAGTTATCACAGCGTAATACAAGGAGGGAAAGTGAGGGAAAATGTTGTTGTCTGAAGAGGTAGCATTTAATTGTACACAGCATCTCCTCTCACTCTATCTTGGTTCGTGCAGGTGACTGTGACCTCCTCCTCAGACCAATTGACAGTACGCCCAGAACATTGTTCTGGGAACCAAAATGAGTATCTCAATTTCAAGGTCCCAGATTTGAGAGAAGAAACCTTGTtagttatcagtcagtcagtcacttgcAGGAACCAACGTTGATGATGAATAATGAATCATGTAAATCATGCTTATATGAATTATTTGGATAGCCGTATATTagagaactaacgggactgccccggCAGAGCCCCTGACTGATGTGTACTATGTTGCATgaagtttgttggaacctctccagcttgctgataATAAAGAATGA
>TU1299443
TTCTATTAAGAATATTGGTGGTAATAATTTGTCATACAGTAAATAGTTTGTCTGGTTTCAGGCTTTTAATTTTGAAAAATGACGTTTTAAAGCCATTTGAACAATTATAACAATTTTAACAATAGTTATCGCAGCGTAATACAAGGAGGGAAAGTGAGGGAAAATGTTGCTGTCTGAAGAGGTAGCATTTAATTGTACACAGCATCTCCTCTCACTCTATCTTGGTTCGTGCAGGTGACTGTGACCTCCTCCTCAGACCAATTGACAGTACGCCCAGAACATTGTTCTGGGAACCAAAATGAGTATCTCAATTTCAAGGTCCCAGATTTGAGAGAAGAAACCTTGTtagttatcagtcagtcagtcacttgcAGGAACCAACGTTGATGATGAATAATGAATCATGTAAATCATGCTTATATGAATTATTTGGATAGCCGTATAATAGAGGACTAACGGGACTGTCCCGGCAGAGCTCCTGACCGATGTGTACTATGCATGAAGTTTGTAGGAACCTCTCCTGCTTGCTGATAATAAATAATGATTCATTAAAGTTAGACTTTGAGTCCCTGGTGGTAATTTCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1299444 False 540 lncRNA 0.39 2 5883265 5961963
TU1299443 True 584 lncRNA 0.38 2 5961387 6013720

Neighbor

gene id symbol gene type direction distance location
nxnl1 LOC106592756 coding downstream 83991 5794309 ~ 5799274 (-)
LOC110485432 LOC106593320 coding downstream 99876 5756733 ~ 5783389 (-)
LOC110487505 LOC106593267 coding downstream 127446 5679164 ~ 5756340 (-)
LOC118938515 LOC106592948 coding downstream 204792 5671437 ~ 5678473 (-)
LOC110516670 LOC106592431 coding downstream 253419 5626611 ~ 5629846 (-)
LOC110512397 LOC106592307 coding upstream 20638 6034358 ~ 6132682 (-)
LOC110512654 LOC106592307 coding upstream 32076 6044857 ~ 6058622 (-)
LOC110512959 LOC106592278 coding upstream 138477 6152197 ~ 6167475 (-)
LOC118938167 LOC106564205 coding upstream 160124 6173844 ~ 6177005 (-)
LOC118938516 NA coding upstream 174338 6188058 ~ 6191695 (-)
G1139840 NA non-coding downstream 58571 5823040 ~ 5824694 (-)
G1139829 NA non-coding downstream 80399 5802655 ~ 5802866 (-)
G1139823 NA non-coding downstream 115288 5767237 ~ 5767977 (-)
G1139818 NA non-coding downstream 136098 5745674 ~ 5747167 (-)
G1139905 NA non-coding upstream 43146 6056866 ~ 6101418 (-)
G1139911 NA non-coding upstream 54643 6068363 ~ 6072303 (-)
G1139913 NA non-coding upstream 69764 6083484 ~ 6085105 (-)
G1138553 LOC106592646 other downstream 620752 5201055 ~ 5262513 (-)
LOC118936520 NA other downstream 638861 5216411 ~ 5244441 (-)
G1138568 NA other downstream 720311 5158165 ~ 5162954 (-)
G1138232 NA other downstream 1263401 4619495 ~ 4620179 (-)
G1139916 NA other upstream 78639 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 592599 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 684662 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 765528 6779248 ~ 6831814 (-)

Expression


Co-expression Network