G1139887


Basic Information

Item Value
gene id G1139887
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5968713 ~ 6017737 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1299494
gcagtgatacgccatccaatctggtttgcacttagtgggactatcatttgtttttcaacaggacaatgacccaacacacctccaggctgtgtaagggctatttgaccaagaaggaaagtgacaGAGTGTTGCAtccgatgacctggcctccacaatcacccgacctcaaacccAATTTacattgtttgggatgagttggaccgcatagtaaaggaaaagcagccaacatgtgctcagcatatgtgggaactccttcaagacttttggaaaagcattcgaggtgaagctggtttagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1299494 True 339 lncRNA 0.47 2 5968713 6017737

Neighbor

gene id symbol gene type direction distance location
nxnl1 LOC106592756 coding downstream 169439 5794309 ~ 5799274 (-)
LOC110485432 LOC106593320 coding downstream 185324 5756733 ~ 5783389 (-)
LOC110487505 LOC106593267 coding downstream 212894 5679164 ~ 5756340 (-)
LOC118938515 LOC106592948 coding downstream 290240 5671437 ~ 5678473 (-)
LOC110516670 LOC106592431 coding downstream 338867 5626611 ~ 5629846 (-)
LOC110512397 LOC106592307 coding upstream 16621 6034358 ~ 6132682 (-)
LOC110512654 LOC106592307 coding upstream 28059 6044857 ~ 6058622 (-)
LOC110512959 LOC106592278 coding upstream 134460 6152197 ~ 6167475 (-)
LOC118938167 LOC106564205 coding upstream 156107 6173844 ~ 6177005 (-)
LOC118938516 NA coding upstream 170321 6188058 ~ 6191695 (-)
G1139840 NA non-coding downstream 144019 5823040 ~ 5824694 (-)
G1139829 NA non-coding downstream 165847 5802655 ~ 5802866 (-)
G1139823 NA non-coding downstream 200736 5767237 ~ 5767977 (-)
G1139818 NA non-coding downstream 221546 5745674 ~ 5747167 (-)
G1139905 NA non-coding upstream 39129 6056866 ~ 6101418 (-)
G1139911 NA non-coding upstream 50626 6068363 ~ 6072303 (-)
G1139913 NA non-coding upstream 65747 6083484 ~ 6085105 (-)
G1138553 LOC106592646 other downstream 706200 5201055 ~ 5262513 (-)
LOC118936520 NA other downstream 724309 5216411 ~ 5244441 (-)
G1138568 NA other downstream 805759 5158165 ~ 5162954 (-)
G1138232 NA other downstream 1348849 4619495 ~ 4620179 (-)
G1139916 NA other upstream 74622 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 588582 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 680645 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 761511 6779248 ~ 6831814 (-)

Expression


Co-expression Network