G1139890


Basic Information

Item Value
gene id G1139890
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5995241 ~ 5996066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1299498
ctctgtctctctgtctctctgtctctctctgtctctctgtctctctctgtctctctgtccctctgtctctctgtctctctctgtctctctgtctctctctgtctctctgtctctctctctctgtctctctctctctctctgtctctctgtctctctctgtctctctgtctctctctgtctctgtctctctctctctctctctgtctctctctgtctctctgtctctgtctctctctgtctctgtctctctctgtctctctgtctctctgtctctctctctgtctctctctctctctctctctgtccctctgtctctctgtctctctctgtctctctgtctctctctgtctctgtctctctctctctct
>TU1299499
ctctgtctctctgtctctctgtctctctctgtctctctgtctctctctgtctctctgtccctctgtctctctgtctctctctgtctctctgtctctctctgtctctctgtctctctctctctgtctctctctctctctctgtctctctgtctctctctgtctctctgtctctctctgtctctctgtctctctgtctctctgtctctctctgtctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1299498 False 368 lncRNA 0.51 2 5995241 5996066
TU1299499 True 217 lncRNA 0.51 2 5995718 5996066

Neighbor

gene id symbol gene type direction distance location
nxnl1 LOC106592756 coding downstream 195967 5794309 ~ 5799274 (-)
LOC110485432 LOC106593320 coding downstream 211852 5756733 ~ 5783389 (-)
LOC110487505 LOC106593267 coding downstream 239422 5679164 ~ 5756340 (-)
LOC118938515 LOC106592948 coding downstream 316768 5671437 ~ 5678473 (-)
LOC110516670 LOC106592431 coding downstream 365395 5626611 ~ 5629846 (-)
LOC110516892 LOC106585402 coding upstream 17093 6013159 ~ 6033506 (-)
LOC110512397 LOC106592307 coding upstream 38292 6034358 ~ 6132682 (-)
LOC110512654 LOC106592307 coding upstream 49730 6044857 ~ 6058622 (-)
LOC110512959 LOC106592278 coding upstream 156131 6152197 ~ 6167475 (-)
LOC118938167 LOC106564205 coding upstream 177778 6173844 ~ 6177005 (-)
G1139840 NA non-coding downstream 170547 5823040 ~ 5824694 (-)
G1139829 NA non-coding downstream 192375 5802655 ~ 5802866 (-)
G1139823 NA non-coding downstream 227264 5767237 ~ 5767977 (-)
G1139818 NA non-coding downstream 248074 5745674 ~ 5747167 (-)
G1139905 NA non-coding upstream 60800 6056866 ~ 6101418 (-)
G1139911 NA non-coding upstream 72297 6068363 ~ 6072303 (-)
G1139913 NA non-coding upstream 87418 6083484 ~ 6085105 (-)
G1138553 LOC106592646 other downstream 732728 5201055 ~ 5262513 (-)
LOC118936520 NA other downstream 750837 5216411 ~ 5244441 (-)
G1138568 NA other downstream 832287 5158165 ~ 5162954 (-)
G1138232 NA other downstream 1375377 4619495 ~ 4620179 (-)
G1139916 NA other upstream 96293 6092359 ~ 6093516 (-)
LOC110485426 LOC106594040 other upstream 610253 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 702316 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 783182 6779248 ~ 6831814 (-)

Expression


Co-expression Network