G1139905


Basic Information

Item Value
gene id G1139905
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6056866 ~ 6101418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1299521
CAGTCAGTAAAATAACTAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACTAGAACATTTATAGAATATGGCATTAATCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCAGTGAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCAATGAGCAGTCAGTAAAATAACCAGTAGATGTGAAGGTATATTATCCAATAGGGCTCTGATTTCCAAATACTGCAACTCACTATTGCATCTTATAATACGT
>TU1299522
GTAAAATAACTACAACATTTATAGAATATGGCATTAATCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATACGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAATCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAATCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCAGTGAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCAATGAGCAGTCAGTAAAATAACCAGTAGATGTGAAGGTATATTATCCAATAGGGCTCTGATTTCCAAATACTGCAACTCACTATTGCATCTTATAATACGT
>TU1299523
ACATTTATGGAATATGGCTGTGAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCAATGAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCAATGAGCAGTCAGTAAAATAACCAGTAGATGTGAAGGTATATTATCCAATAGGGCTCTGATTTCCAAATACTGCAACTCACTATTGCATCTTATAATACGT
>TU1299524
GTAAAATAACTACAACATTTATAGAATATGGCATTAATCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCTGTGAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCATTAAGCAGTCAGTAAAATAACCAGAACATTTATAGAATATGGCAATGAGCAGTCAGTAAAATAACCAGTAGATGTGAAGGTATATTATCCAATAGGGCTCTGATTTCCAAATACTGCAACTCACTATTGCATCTTATAATACGT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1299521 False 359 lncRNA 0.31 3 6056866 6101418
TU1299522 False 529 lncRNA 0.30 3 6056866 6101324
TU1299523 False 383 lncRNA 0.32 2 6056866 6057381
TU1299524 True 353 lncRNA 0.31 2 6056866 6101324

Neighbor

gene id symbol gene type direction distance location
LOC110516892 LOC106585402 coding downstream 23360 6013159 ~ 6033506 (-)
nxnl1 LOC106592756 coding downstream 257592 5794309 ~ 5799274 (-)
LOC110485432 LOC106593320 coding downstream 273477 5756733 ~ 5783389 (-)
LOC110487505 LOC106593267 coding downstream 301047 5679164 ~ 5756340 (-)
LOC118938515 LOC106592948 coding downstream 378393 5671437 ~ 5678473 (-)
LOC110512959 LOC106592278 coding upstream 50779 6152197 ~ 6167475 (-)
LOC118938167 LOC106564205 coding upstream 72426 6173844 ~ 6177005 (-)
LOC118938516 NA coding upstream 86640 6188058 ~ 6191695 (-)
LOC118938166 LOC106592843 coding upstream 102553 6203971 ~ 6244613 (-)
LOC110519908 LOC106592827 coding upstream 147492 6248910 ~ 6306407 (-)
LOC110512654 LOC106592307 non-coding downstream 7926 6044857 ~ 6058622 (-)
G1139888 NA non-coding downstream 37700 5969817 ~ 6019166 (-)
G1139887 NA non-coding downstream 39129 5968713 ~ 6017737 (-)
G1139846 NA non-coding downstream 43146 5883265 ~ 6013720 (-)
G1139890 NA non-coding downstream 60800 5995241 ~ 5996066 (-)
G1139898 NA non-coding upstream 27612 6129030 ~ 6131208 (-)
G1139747 NA non-coding upstream 50169 6151587 ~ 6234823 (-)
G1139981 NA non-coding upstream 187153 6288571 ~ 6302416 (-)
G1139994 NA non-coding upstream 215253 6316671 ~ 6317016 (-)
G1140000 NA non-coding upstream 222109 6323527 ~ 6323756 (-)
G1138553 LOC106592646 other downstream 794353 5201055 ~ 5262513 (-)
LOC118936520 NA other downstream 812462 5216411 ~ 5244441 (-)
G1138568 NA other downstream 893912 5158165 ~ 5162954 (-)
LOC110485426 LOC106594040 other upstream 504901 6600141 ~ 6649233 (-)
LOC118938170 LOC106564207 other upstream 596964 6698319 ~ 6717102 (-)
LOC110510388 LOC106592846 other upstream 677830 6779248 ~ 6831814 (-)
LOC110494877 LOC106564203 other upstream 743992 6842471 ~ 6853303 (-)
G1140208 LOC106598633 other upstream 818311 6919729 ~ 6952206 (-)

Expression


Co-expression Network