G1139998


Basic Information

Item Value
gene id G1139998
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6778376 ~ 6778963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1299641
ttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatctttctactgccaagtttacaccgtCACTATTGCACTGAAATGTTTTGATCGGGAAGTTGTCTAAATGGGTTATCATTTTTTGTTAgcgagtgaaggaaaagcagccaacaagtgctcagtatatgtgggaactccttcaagacggttggaaaagcattcctcatgaagctggttgagggaatgccaagagtgtgcaaagctgtcatcaaggcaaagggttgctactttgaagaatctcaaatataaaatgtattttatgtttaacacttttttggttactacatgattccatattttttatttcatcgttttgatgtcttcactattattctacaatgtagaaaatagtacaaataaagaaaccc
>TU1299640
agtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctgtgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatctttctactgccaagtttacaccgtCACTATTGCACTGAAATGTTTTGATCGGGAAGTTGTCTAAATGGGTTATCATTTTTTGTTAgcgagtgaaggaaaagcagccaacaagtgctcagtatatgtgggaactccttcaagacggttggaaaagcattcctcatgaagctggttgagggaatgccaagagtgtgcaaagctgtcatcaaggcaaagggttgctactttgaagaatctcaaatataaaatgtattttatgtttaacacttttttggttactaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1299641 False 487 lncRNA 0.38 1 6778376 6778862
TU1299640 True 506 lncRNA 0.42 1 6778458 6778963

Neighbor

gene id symbol gene type direction distance location
LOC118938170 LOC106564207 coding downstream 61274 6698319 ~ 6717102 (-)
LOC110511140 LOC106564086 coding downstream 99806 6655544 ~ 6678570 (-)
LOC110485426 LOC106594040 coding downstream 129143 6600141 ~ 6649233 (-)
LOC118938537 NA coding downstream 185229 6591946 ~ 6593147 (-)
LOC110485423 LOC106592905 coding downstream 193683 6545251 ~ 6584693 (-)
LOC110510388 LOC106592846 coding upstream 1043 6779248 ~ 6831814 (-)
LOC110494877 LOC106564203 coding upstream 63508 6842471 ~ 6853303 (-)
LOC118938173 NA coding upstream 93582 6872545 ~ 6874113 (-)
LOC110513509 LOC106593154 coding upstream 200176 6923538 ~ 7083659 (-)
LOC110485501 LOC106596103 coding upstream 505753 7284716 ~ 7290833 (-)
G1140134 NA non-coding downstream 41158 6736916 ~ 6737218 (-)
G1140102 NA non-coding downstream 179344 6598802 ~ 6599032 (-)
G1140101 NA non-coding downstream 183325 6594680 ~ 6595051 (-)
G1140150 NA non-coding upstream 6274 6785237 ~ 6785670 (-)
G1140151 NA non-coding upstream 22661 6801624 ~ 6802096 (-)
G1140154 NA non-coding upstream 27756 6806719 ~ 6814763 (-)
G1140161 NA non-coding upstream 56545 6835508 ~ 6835793 (-)
G1139916 NA other downstream 684860 6092359 ~ 6093516 (-)
LOC110512654 LOC106592307 other downstream 729436 6044857 ~ 6058622 (-)
LOC118938515 LOC106592948 other downstream 1106129 5671437 ~ 5678473 (-)
G1140208 LOC106598633 other upstream 140766 6919729 ~ 6952206 (-)
G1140269 NA other upstream 259914 7038877 ~ 7042520 (-)

Expression


Co-expression Network