G1140311


Basic Information

Item Value
gene id G1140311
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7208972 ~ 7210810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1300066
gagaatccTACCGtcaaaataaagagagagaaaagagagggttGCATAATTTGTTTGTTTATCCATCTTTAATACGAGGGTCCTCAGATAAATCTCTTGTGCAGGGCTCTGTTCAAGATCACAAATGTTGTGCAACGTTACCCGAAAACAGCTTTTGTGACCTTAAAGATCAACTAGCgccggggtgaagtttcccctaggtacagatctaggatcagcttgacCTCCCTCAATCATAACCTTAACCGCTAGTGGGGAAAATGCTAAGCTGCCCCAGGATCAGCAtttaggggaaacttcaccccggcTCCATGAGTCTGTTAATGCTGGACGTCACCACGGTTGAGAACACAGCGAGCTTGTAAACGTAGCCTACGTATGTAGCCACTTCTCAAAATGTCTGCCATACTGTCCTCATCGGCTGTGTGAATGTAGCCTCAGACGACCATCCTGACCGCTGAGCTCTCAGTTGGTCTCACTTCATTTCATCCGTGTAGCAAAACAGATTGTAAGCGTGTGATATCAGGATGGTCGTATGAGGTTAGGGTCAATGTATCCTCAagataaaaagagagaaaaataggaTGTATTCAAAACAGATTGTAAGCGTGTGATATCAGGATGGTCGTATGAGGTTAGGGTCAATGTATCCTCAagataaaaagagagaaaaataggaTGTATTCAGAACGTGAAGAAAGTAAACAGGTTTTAGCTCCCACATAAACATTCAGTCACCAGTCaccaggaaacaggaaacaggaaacaggaaacacccTTTCCTTGTTTTTGTCTGTATTTCTttcattttcttattttttctgaATCCGAGAGAAAAATAAATTCCACGTCTGATTCATCAAGCTCAGGTTGTCTCGGATCGTTCGTTCATGTCAAACGACATGGATGGATCGGTTGCCTAGTAACGGAAGGCCAACCAACAGAGCAGAGAAAACAAACAACCAAATGTACATTTTTAGAACTAAAAGGGTTTTTTATCAACAACAAGAACAAAAGAAGAAAAATGATTCAATCCAACGACAGCCTCCCACagcggcaccctattccctctatagggcactaccaaaagttatagtgcactaccagacgtagtacactatatagggaatagggtgcaatttgggaaggAGATTGGATATTTGCATGGATCAGTCTAGTAACAGTTCtgtcaatatacacacacacacaaacacaatgtagtaatagcgctcacacacacacacatctctttaGACAGAAACCACTTTAGACAgaaaccactcacacacacacacatctcttaaGACAGAAACCACTCACACTGTATAGTACAGACTTCCAGACAAACCCCAACAGTCAGCCAGATCAACCCCAGAGTAGTATGGTGTGTGGTGGGGATCAGTTGACCGGGGTGTCCGTCAGTATCTGGAGGAGTTGGCATCATTTCCTCAAACATGGGGTGGGGGGCTTGGTCAGTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgaggcagTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgtgtgtgtagttagatagaggagtgtgtgtgtagtcagatAGGGTCAGGGGGGGGGTGAGGACTATACATGTGTCTCTCAGGAGATGGTGGAGAACTCTTTGAGCAGGAGGTCCTGACTCAGTGTGTTCAGAGACACATTCTTCCTCACATTCAGACTGATGG
>TU1300067
gagaatccTACCGtcaaaataaagagagagaaaagagagggttGCATAATTTGTTTGTTTATCCATCTTTAATACGAGGGTCCTCAGATAAATCTCTTGTGCAGGGCTCTGTTCAAGATCACAAATGTTGTGCAACGTTACCCGAAAACAGCTTTTGTGACCTTAAAGATCAACTAGCgccggggtgaagtttcccctaggtacagatctaggatcagcttgacCTCCCTCAATCATAACCTTAACCGCTAGTGGGGAAAATGCTAAGCTGCCCCAGGATCAGCAtttaggggaaacttcaccccggcTCCATGAGTCTGTTAATGCTGGACGTCACCACGGTTGAGAACACAGCGAGCTTGTAAACGTAGCCTACGTATGTAGCCACTTCTCAAAATGTCTGCCATACTGTCCTCATCGGCTGTGTGAATGTAGCCTCAGACGACCATCCTGACCGCTGAGCTCTCAGTTGGTCTCACTTCATTTCATCCGTGTAGCAAAACAGATTGTAAGCGTGTGATATCAGGATGGTCGTATGAGGTTAGGGTCAATGTATCCTCAagataaaaagagagaaaaataggaTGTATTCAGAACGTGAAGAAAGTAAACAGGTTTTAGCTCCCACATAAACATTCAGTCACCAGTCaccaggaaacaggaaacaggaaacaggaaacacccTTTCCTTGTTTTTGTCTGTATTTCTttcattttcttattttttctgaATCCGAGAGAAAAATAAATTCCACGTCTGATTCATCAAGCTCAGGTTGTCTCGGATCGTTCGTTCATGTCAAACGACATGGATGGATCGGTTGCCTAGTAACGGAAGGCCAACCAACAGAGCAGAGAAAACAAACAACCAAATGTACATTTTTAGAACTAAAAGGGTTTTTTATCAACAACAAGAACAAAAGAAGAAAAATGATTCAATCCAACGACAGCCTCCCACagcggcaccctattccctctatagggcactaccaaaagttatagtgcactaccagacgtagtacactatatagggaatagggtgcaatttgggaaggAGATTGGATATTTGCATGGATCAGTCTAGTAACAGTTCtgtcaatatacacacacacacaaacacaatgtagtaatagcgctcacacacacacacatctctttaGACAGAAACCACTTTAGACAgaaaccactcacacacacacacatctcttaaGACAGAAACCACTCACACTGTATAGTACAGACTTCCAGACAAACCCCAACAGTCAGCCAGATCAACCCCAGAGTAGTATGGTGTGTGGTGGGGATCAGTTGACCGGGGTGTCCGTCAGTATCTGGAGGAGTTGGCATCATTTCCTCAAACATGGGGTGGGGGGCTTGGTCAGTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgaggcagTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgaggcagTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgtgtgtgtagttagatagaggagtgtgtgtgtagtcagatAGGGTCAGGGGGGGGGTGAGGACTATACATGTGTCTCTCAGGAGATGGTGGAGAACTCTTTGAGCAGGAGGTCCTGACTCAGTGTGTTCAGAGACACATTCTTCCTCACATTCAGACTGATGG
>TU1300068
gagaatccTACCGtcaaaataaagagagagaaaagagagggttGCATAATTTGTTTGTTTATCCATCTTTAATACGAGGGTCCTCAGATAAATCTCTTGTGCAGGGCTCTGTTCAAGATCACAAATGTTGTGCAACGTTACCCGAAAACAGCTTTTGTGACCTTAAAGATCAACTAGCgccggggtgaagtttcccctaggtacagatctaggatcagcttgacCTCCCTCAATCATAACCTTAACCGCTAGTGGGGAAAATGCTAAGCTGCCCCAGGATCAGCAtttaggggaaacttcaccccggcTCCATGAGTCTGTTAATGCTGGACGTCACCACGGTTGAGAACACAGCGAGCTTGTAAACGTAGCCTACGTATGTAGCCACTTCTCAAAATGTCTGCCATACTGTCCTCATCGGCTGTGTGAATGTAGCCTCAGACGACCATCCTGACCGCTGAGCTCTCAGTTGGTCTCACTTCATTTCATCCGTGTAGCAAAACAGATTGTAAGCGTGTGATATCAGGATGGTCGTATGAGGTTAGGGTCAATGTATCCTCAagataaaaagagagaaaaataggaTGTATTCAAAACAGATTGTAAGCGTGTGATATCAGGATGGTCGTATGAGGTTAGGGTCAATGTATCCTCAagataaaaagagagaaaaataggaTGTATTCAGAACGTGAAGAAAGTAAACAGGTTTTAGCTCCCACATAAACATTCAGTCACCAGTCaccaggaaacaggaaacaggaaacaggaaacacccTTTCCTTGTTTTTGTCTGTATTTCTttcattttcttattttttctgaATCCGAGAGAAAAATAAATTCCACGTCTGATTCATCAAGCTCAGGTTGTCTCGGATCGTTCGTTCATGTCAAACGACATGGATGGATCGGTTGCCTAGTAACGGAAGGCCAACCAACAGAGCAGAGAAAACAAACAACCAAATGTACATTTTTAGAACTAAAAGGGTTTTTTATCAACAACAAGAACAAAAGAAGAAAAATGATTCAATCCAACGACAGCCTCCCACagcggcaccctattccctctatagggcactaccaaaagttatagtgcactaccagacgtagtacactatatagggaatagggtgcaatttgggaaggAGATTGGATATTTGCATGGATCAGTCTAGTAACAGTTCtgtcaatatacacacacacacaaacacaatgtagtaatagcgctcacacacacacacatctctttaGACAGAAACCACTTTAGACAgaaaccactcacacacacacacatctcttaaGACAGAAACCACTCACACTGTATAGTACAGACTTCCAGACAAACCCCAACAGTCAGCCAGATCAACCCCAGAGTAGTATGGTGTGTGGTGGGGATCAGTTGACCGGGGTGTCCGTCAGTATCTGGAGGAGTTGGCATCATTTCCTCAAACATGGGGTGGGGGGCTTGGTCAGTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgaggcagTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgtgtgtgtagttagatagaggagtgtgtgtgtagtcagatAGGGTCAGGGGGGGGGTGAGGACTATACATGTGTCTCTCAGGAGATGGTGGAGAACTCTTTGAGCAGGAGGTCCTGACTCAGTGTGTTCAGAGACACATTCTTCCTCACATTCAGACTGATGG
>TU1300070
gagaatccTACCGtcaaaataaagagagagaaaagagagggttGCATAATTTGTTTGTTTATCCATCTTTAATACGAGGGTCCTCAGATAAATCTCTTGTGCAGGGCTCTGTTCAAGATCACAAATGTTGTGCAACGTTACCCGAAAACAGCTTTTGTGACCTTAAAGATCAACTAGCgccggggtgaagtttcccctaggtacagatctaggatcagcttgacCTCCCTCAATCATAACCTTAACCGCTAGTGGGGAAAATGCTAAGCTGCCCCAGGATCAGCAtttaggggaaacttcaccccggcTCCATGAGTCTGTTAATGCTGGACGTCACCACGGTTGAGAACACAGCGAGCTTGTAAACGTAGCCTACGTATGTAGCCACTTCTCAAAATGTCTGCCATACTGTCCTCATCGGCTGTGTGAATGTAGCCTCAGACGACCATCCTGACCGCTGAGCTCTCAGTTGGTCTCACTTCATTTCATCCGTGTAGCAAAACAGATTGTAAGCGTGTGATATCAGGATGGTCGTATGAGGTTAGGGTCAATGTATCCTCAagataaaaagagagaaaaataggaTGTATTCAAAACAGATTGTAAGCGTGTGATATCAGGATGGTCGTATGAGGTTAGGGTCAATGTATCCTCAagataaaaagagagaaaaataggaTGTATTCAGAACGTGAAGAAAGTAAACAGGTTTTAGCTCCCACATAAACATTCAGTCACCAGTCaccaggaaacaggaaacaggaaacaggaaacacccTTTCCTTGTTTTTGTCTGTATTTCTttcattttcttattttttctgaATCCGAGAGAAAAATAAATTCCACGTCTGATTCATCAAGCTCAGGTTGTCTCGGATCGTTCGTTCATGTCAAACGACATGGATGGATCGGTTGCCTAGTAACGGAAGGCCAACCAACAGAGCAGAGAAAACAAACAACCAAATGTACATTTTTAGAACTAAAAGGGTTTTTTATCAACAACAAGAACAAAAGAAGAAAAATGATTCAATCCAACGACAGCCTCCCACagcggcaccctattccctctatagggcactaccaaaagttatagtgcactaccagacgtagtacactatatagggaatagggtgcaatttgggaaggAGATTGGATATTTGCATGGATCAGTCTAGTAACAGTTCtgtcaatatacacacacacacaaacacaatgtagtaatagcgctcacacacacacacatctctttaGACAGAAACCACTTTAGACAgaaaccactcacacacacacacatctcttaaGACAGAAACCACTCACACTGTATAGTACAGACTTCCAGACAAACCCCAACAGTCAGCCAGATCAACCCCAGAGTAGTATGGTGTGTGGTGGGGATCAGTTGACCGGGGTGTCCGTCAGTATCTGGAGGAGTTGGCATCATTTCCTCAAACATGGGGTGGGGGGCTTGGTCAGTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgtgtgtgtagttagatagaggagtgtgtgtgtagggcaggtggggagagagagaggtgaggcagTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgtgtgtgtagttagatagaggagtgtgtgtgtagtcagatAGGGTCAGGGGGGGGGTGAGGACTATACATGTGTCTCTCAGGAGATGGTGGAGAACTCTTTGAGCAGGAGGTCCTGACTCAGTGTGTTCAGAGACACATTCTTCCTCACATTCAGACTGATGG
>TU1300071
gagaatccTACCGtcaaaataaagagagagaaaagagagggttGCATAATTTGTTTGTTTATCCATCTTTAATACGAGGGTCCTCAGATAAATCTCTTGTGCAGGGCTCTGTTCAAGATCACAAATGTTGTGCAACGTTACCCGAAAACAGCTTTTGTGACCTTAAAGATCAACTAGCgccggggtgaagtttcccctaggtacagatctaggatcagcttgacCTCCCTCAATCATAACCTTAACCGCTAGTGGGGAAAATGCTAAGCTGCCCCAGGATCAGCAtttaggggaaacttcaccccggcTCCATGAGTCTGTTAATGCTGGACGTCACCACGGTTGAGAACACAGCGAGCTTGTAAACGTAGCCTACGTATGTAGCCACTTCTCAAAATGTCTGCCATACTGTCCTCATCGGCTGTGTGAATGTAGCCTCAGACGACCATCCTGACCGCTGAGCTCTCAGTTGGTCTCACTTCATTTCATCCGTGTAGCAAAACAGATTGTAAGCGTGTGATATCAGGATGGTCGTATGAGGTTAGGGTCAATGTATCCTCAagataaaaagagagaaaaataggaTGTATTCAAAACAGATTGTAAGCGTGTGATATCAGGATGGTCGTATGAGGTTAGGGTCAATGTATCCTCAagataaaaagagagaaaaataggaTGTATTCAGAACGTGAAGAAAGTAAACAGGTTTTAGCTCCCACATAAACATTCAGTCACCAGTCaccaggaaacaggaaacaggaaacaggaaacacccTTTCCTTGTTTTTGTCTGTATTTCTttcattttcttattttttctgaATCCGAGAGAAAAATAAATTCCACGTCTGATTCATCAAGCTCAGGTTGTCTCGGATCGTTCGTTCATGTCAAACGACATGGATGGATCGGTTGCCTAGTAACGGAAGGCCAACCAACAGAGCAGAGAAAACAAACAACCAAATGTACATTTTTAGAACTAAAAGGGTTTTTTATCAACAACAAGAACAAAAGAAGAAAAATGATTCAATCCAACGACAGCCTCCCACagcggcaccctattccctctatagggcactaccaaaagttatagtgcactaccagacgtagtacactatatagggaatagggtgcaatttgggaaggAGATTGGATATTTGCATGGATCAGTCTAGTAACAGTTCtgtcaatatacacacacacacaaacacaatgtagtaatagcgctcacacacacacacatctctttaGACAGAAACCACTTTAGACAgaaaccactcacacacacacacatctcttaaGACAGAAACCACTCACACTGTATAGTACAGACTTCCAGACAAACCCCAACAGTCAGCCAGATCAACCCCAGAGTAGTATGGTGTGTGGTGGGGATCAGTTGACCGGGGTGTCCGTCAGTATCTGGAGGAGTTGGCATCATTTCCTCAAACATGGGGTGGGGGGCTTGGTCAGTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgtgtgtgtagttagatagaggagtgtgtgtgtagtcagatAGGGTCAGGGGGGGGGTGAGGACTATACATGTGTCTCTCAGGAGATGGTGGAGAACTCTTTGAGCAGGAGGTCCTGACTCAGTGTGTTCAGAGACACATTCTTCCTCACATTCAGACTGATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1300066 False 1732 lncRNA 0.45 2 7208972 7210810
TU1300067 False 1688 lncRNA 0.46 3 7208972 7210810
TU1300068 False 1732 lncRNA 0.45 2 7208972 7210810
TU1300070 False 1789 lncRNA 0.45 2 7208972 7210810
TU1300071 True 1682 lncRNA 0.44 2 7208972 7210810

Neighbor

gene id symbol gene type direction distance location
LOC110513509 LOC106593154 coding downstream 208618 6923538 ~ 7083659 (-)
LOC118938173 NA coding downstream 334859 6872545 ~ 6874113 (-)
LOC110494877 LOC106564203 coding downstream 355669 6842471 ~ 6853303 (-)
LOC110510388 LOC106592846 coding downstream 377158 6779248 ~ 6831814 (-)
LOC118938170 LOC106564207 coding downstream 491870 6698319 ~ 6717102 (-)
LOC110485501 LOC106596103 coding upstream 73906 7284716 ~ 7290833 (-)
LOC110519431 LOC106596103 coding upstream 105504 7316314 ~ 7403758 (-)
LOC118938181 NA coding upstream 130266 7341076 ~ 7341680 (-)
LOC118938520 LOC106596103 coding upstream 202616 7413426 ~ 7423027 (-)
LOC118938180 NA coding upstream 223676 7434486 ~ 7436102 (-)
G1140300 LOC107588454 non-coding downstream 54699 7147582 ~ 7154273 (-)
G1140298 NA non-coding downstream 62249 7146377 ~ 7146723 (-)
G1140297 NA non-coding downstream 63058 7145714 ~ 7145914 (-)
G1140294 NA non-coding downstream 70869 7137314 ~ 7138103 (-)
G1140272 NA non-coding downstream 75178 7131544 ~ 7133794 (-)
G1140333 NA non-coding upstream 22812 7233622 ~ 7233985 (-)
G1140347 NA non-coding upstream 38667 7249477 ~ 7251992 (-)
G1140353 NA non-coding upstream 52399 7263209 ~ 7264346 (-)
G1140378 NA non-coding upstream 71156 7281966 ~ 7282466 (-)
G1140404 NA non-coding upstream 100928 7311738 ~ 7315568 (-)
G1140323 NA other downstream 16729 7190696 ~ 7192243 (-)
G1140269 NA other downstream 166452 7038877 ~ 7042520 (-)
G1140270 NA other downstream 167282 7040627 ~ 7041690 (-)
G1140208 LOC106598633 other downstream 256766 6919729 ~ 6952206 (-)
G1140343 NA other upstream 34902 7245712 ~ 7246650 (-)
G1140367 LOC106601621 other upstream 257036 7409260 ~ 7695746 (-)
LOC110493310 LOC106591489 other upstream 291581 7490185 ~ 7534632 (-)
G1140368 LOC106591490 other upstream 448887 7659697 ~ 7730493 (-)
LOC110485610 hoga1 other upstream 848136 8058941 ~ 8080347 (-)

Expression


Co-expression Network