G1140347


Basic Information

Item Value
gene id G1140347
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7249477 ~ 7251992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1300109
gaaaaatgactgatttacagttcatgggggttgcctaatcacatatatgaagttttggacagatctgacttttttaacccttcgaaacagcccctgagacaccaattatggcacttccggttggcacaggaagctataaatcaccacatgtcttgattgacatggccacttacagaatcctgagttttaagtccttacgttaagaattgactgatctacacagggttgaatgcaccatgtctatcaaactgcaggcagtgtatgggtaaacacttttagggtgatttgaaccacttccggttggtccaggaagcttagaatcgacacaggtagacctcatagtggcctgatggactggtaccgaagacaggttcatacggcattcataacccacataggcctcaggttgaaattaggggtgcaggcaatgtattcctatggggagagatgacactgtaatctgtgagatcaaaaaaccctgttttactgtgaagggttaatgccacacggtcaaggttaggcttgttgagatcgggaggaccttaggaacattcatgtggtggaatttttcttctcaccctaacggttctctcactgtcactcaaaagcaaatgacattgtggggcaggcttcattttgggcctactattctaatggtcggttattgtgttatttcagaaaatcatagaaaatcacagaaatgtcgcagagctccgctgcacactttaaaaagattcgtatgaacaccctgcaactggatctgtaaccgttgaaaaaaaaaaatgcctatttgtgaccatcaccaatttgtcattgttccgtttctcttaaatgacgatagataaatggctggttctttttttattgacaccggaggctccttggctttgacccgaagtggaaaaataatttctctacttccattttaagcctttaatcccagaaaaatggccgtagctcaaaaaccgtcgaggcctagacgccatcccgttcggggccaactgcccct
>TU1300110
gaaaaatgactgatttacagttcatgggggttgcctaatcacatatatgaagttttggacagatctgacttttttaacccttcgaaacagcccctgagacaccaattatggcacttccggttggcacaggaagctataaatcaccacatgtcttgattgacatggccacttacagaatcctgagttttaagtccttacgttaagaattgactgatctacacagggttgaatgcaccatgtctatcaaactgcaggcagtgtatgggtaaacacttttagggtgatttgaaccacttccggttggtccaggaagcttagaatcgacacaggtagacctcatagtggcctgatggactggtaccgaagacaggttcatacggcattcataacccacataggcctcaggttgaaattaggggtgcaggcaatgtattcctatggggagagatgacactgtaatctgtgagatcaaaaaaccctgttttactgtgaagggttaatgccacacggtcaaggttaggcttgttgagatcgggaggaccttaggaacattcatgtggtggaatttttcttctcaccctaacggttctctcactgtcactcaaaagcaaatgacattgtggggcaggcttcattttgggcctactattctaatggtcggttattgtgttatttcagaaaatcatagaaaatcacagaaatgtcgcagagctccgctgcacactttaaaaagattcgtatgaacaccctgcaactggatctgtaaccgttgaaaaaaaaaaatgcctatttgtgaccatcaccaatttgtcattgttccgtttctcttaaatgacgatagataaatggctggttctttttttattgacaccggaggctccttggctttgacccgaagtggaaaaataatttctctacttccattttaagcctttaatcccagaaaaatggccgtagctcaaaaaccgtcgaggcctagacgccatcccgttcggggccaactgcccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1300109 False 1009 lncRNA 0.43 2 7249477 7251992
TU1300110 True 1009 lncRNA 0.43 2 7249477 7251992

Neighbor

gene id symbol gene type direction distance location
LOC110513509 LOC106593154 coding downstream 249123 6923538 ~ 7083659 (-)
LOC118938173 NA coding downstream 375364 6872545 ~ 6874113 (-)
LOC110494877 LOC106564203 coding downstream 396174 6842471 ~ 6853303 (-)
LOC110510388 LOC106592846 coding downstream 417663 6779248 ~ 6831814 (-)
LOC118938170 LOC106564207 coding downstream 532375 6698319 ~ 6717102 (-)
LOC110485501 LOC106596103 coding upstream 32724 7284716 ~ 7290833 (-)
LOC110519431 LOC106596103 coding upstream 64322 7316314 ~ 7403758 (-)
LOC118938181 NA coding upstream 89084 7341076 ~ 7341680 (-)
LOC118938520 LOC106596103 coding upstream 161434 7413426 ~ 7423027 (-)
LOC118938180 NA coding upstream 182494 7434486 ~ 7436102 (-)
G1140333 NA non-coding downstream 15492 7233622 ~ 7233985 (-)
G1140311 NA non-coding downstream 38667 7208972 ~ 7210810 (-)
G1140300 LOC107588454 non-coding downstream 95204 7147582 ~ 7154273 (-)
G1140298 NA non-coding downstream 102754 7146377 ~ 7146723 (-)
G1140297 NA non-coding downstream 103563 7145714 ~ 7145914 (-)
G1140353 NA non-coding upstream 11217 7263209 ~ 7264346 (-)
G1140378 NA non-coding upstream 29974 7281966 ~ 7282466 (-)
G1140404 NA non-coding upstream 59746 7311738 ~ 7315568 (-)
G1140372 NA non-coding upstream 70707 7322699 ~ 7368886 (-)
G1140408 NA non-coding upstream 72788 7324780 ~ 7326845 (-)
G1140343 NA other downstream 2827 7245712 ~ 7246650 (-)
G1140323 NA other downstream 57234 7190696 ~ 7192243 (-)
G1140269 NA other downstream 206957 7038877 ~ 7042520 (-)
G1140270 NA other downstream 207787 7040627 ~ 7041690 (-)
G1140367 LOC106601621 other upstream 215854 7409260 ~ 7695746 (-)
LOC110493310 LOC106591489 other upstream 250399 7490185 ~ 7534632 (-)
G1140368 LOC106591490 other upstream 407705 7659697 ~ 7730493 (-)
LOC110485610 hoga1 other upstream 806954 8058941 ~ 8080347 (-)
G1141490 NA other upstream 1079143 8331135 ~ 8332518 (-)

Expression


Co-expression Network