G1140368 (LOC106591490)


Basic Information

Item Value
gene id G1140368
gene name LOC106591490
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7659697 ~ 7730493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1300151
GATGTATgtcaatatatatattgtttattaTTCTAAATGAACCTGTCCAATACATCTATAACATTGAGTCTCATTATGGTTTCAGGAATTGATCAGTTGCATTTTGTTTCAGGTGTTGTGGGTGAGAGCTGTATGAATGTGACTTACACCCATCAGAGTATCTGTGCTTTGAAAGGGTCAACAGTGGACATATCCTGCTTTTACACACATCCCAGTTGGCATAACGTCATAGAAGTGTCCTGGTTCAACAAATGGGAGTCTGGTGTCACTAAAGACCTGAGCCTGAACCCAGAGTATGCAGATCGTGTGGAATACCATCAACAAACAGACAAGGGCTCCACCCTGAGAATCACAGACCTGAGAGAAAGTGACTCAACTGAGTACAAGTTCAGATTTACAACTGATGAGGCAAGATGGGGGTACAGCTTCCCTGGAACAACTCTGACTGTCACAGGTTCTCAGGTGGAGGTGACTCCTAAATGGAGATCAGAGTCGaagacactgtcctgtatcaccacctgtact
>TU1300152
CAGCGACAAACAGACAAGGACTCCACTCTAAAAATCACAGACCTGAGGGAAAGAGACTCAACTGAGTACAAGTTCAGATTTAAAACAGTTCATGCAGAATGGGGATATACCTTCTCTGGAAcaactctgtctgtcacagGTTCTCAGGTGGAGGTGACTCCTAAATGGAGATCAGAGTCGaagacactgtcctgtatcaccacctgtact

Function

NR:

description
B-cell receptor CD22-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1300151 False 525 TUCP 0.43 2 7659697 7660321
TU1300152 True 210 lncRNA 0.45 2 7659697 7730493

Neighbor

gene id symbol gene type direction distance location
LOC118938521 NA coding downstream 5523 7578674 ~ 7699845 (-)
LOC118938178 LOC106601621 coding downstream 91756 7566947 ~ 7567941 (-)
LOC118938177 LOC106591664 coding downstream 94864 7530063 ~ 7564833 (-)
LOC118938179 NA coding downstream 113118 7545906 ~ 7546579 (-)
LOC110493310 LOC106591489 coding downstream 125065 7490185 ~ 7534632 (-)
LOC118938522 LOC106591490 coding upstream 3552 7734045 ~ 7736476 (-)
LOC118938183 LOC106591333 coding upstream 195440 7925933 ~ 8006473 (-)
LOC110485610 hoga1 coding upstream 328448 8058941 ~ 8080347 (-)
LOC110518530 LOC106591329 coding upstream 368016 8098509 ~ 8119143 (-)
LOC110485578 LOC105012087 coding upstream 449988 8180481 ~ 8201020 (-)
G1140461 NA non-coding downstream 12853 7515289 ~ 7646844 (-)
G1140486 NA non-coding downstream 17476 7608564 ~ 7642221 (-)
G1140436 NA non-coding downstream 36697 7407978 ~ 7623000 (-)
G1140473 NA non-coding downstream 88842 7569851 ~ 7570855 (-)
G1140471 NA non-coding downstream 112571 7546739 ~ 7547126 (-)
G1140526 NA non-coding upstream 20301 7750794 ~ 7751003 (-)
G1140531 NA non-coding upstream 26444 7756937 ~ 7761076 (-)
G1140558 NA non-coding upstream 98630 7829123 ~ 7829555 (-)
G1140559 NA non-coding upstream 102878 7833371 ~ 7833723 (-)
G1140560 NA non-coding upstream 105983 7836476 ~ 7836694 (-)
G1140343 NA other downstream 413047 7245712 ~ 7246650 (-)
G1140323 NA other downstream 467454 7190696 ~ 7192243 (-)
G1140269 NA other downstream 617177 7038877 ~ 7042520 (-)
G1141490 NA other upstream 600642 8331135 ~ 8332518 (-)
G1141517 NA other upstream 696120 8426613 ~ 8452319 (-)
G1141579 NA other upstream 860472 8590965 ~ 8592898 (-)
ncf4 p40phox other upstream 929066 8655106 ~ 8696718 (-)
LOC118938175 LOC106564328 coding upstream 12451 7672772 ~ 7698366 (-)
LOC118938176 LOC106592614 coding upstream 22645 7682966 ~ 7689906 (-)
LOC110493317 LOC106591490 coding upstream 54052 7714373 ~ 7733873 (-)
G1140498 NA non-coding upstream 5390 7665711 ~ 7667999 (-)
G1140499 NA non-coding upstream 5596 7665917 ~ 7672113 (-)
G1140504 NA non-coding upstream 36226 7696547 ~ 7710867 (-)
LOC110513509 LOC106593154 other downstream 578242 6923538 ~ 7083659 (-)

Expression


Co-expression Network