G1140531


Basic Information

Item Value
gene id G1140531
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7756937 ~ 7761076 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1300351
CACATGTAGAAAAATAGTTTTAATCCATAGCACCAGTAGTAAATCAATGCATCTATTTGACAGAAtaataaaaacaaacatcttATTTTACACAACAGGTGAAGGTAGGCTAAAATGTCCTTACATTAAAAGGCACTGACTGGTAACAGGTTTATATGAACAGAGGAAGATGCATGGTAGGAAATCTATGCAGCAATGTGAGATTACAGTATACTATGTTTATTTTAGTAGACATTAGTGTAACTCCATGTCAGCgtctcaaattgcaccctatgtagtgcactacttctgaccagggcacaGAGCTCTgctccaaagtagtgcactatatagggaatagggccctggtctaagttgtgcactatatagggaatagggccctggtctaaagttgtgcactatatagggaatagggccctggtctaaagtagtgcactatatagggaagagggccctgttctaaagtagtacactataaagggaatggggtgccatttgggacacagacaacaGGGCAGAATGAAAATGAACAGAAATAAACAAGTAGTACTGTACAGTTGATGTGTCAACATTTAAGACCACGGTCAACATTGGCTGACAAAACCAAAGACTTTCAACATACACACGTTAACACAACAATAATAAGGGAGATTAAAAGATAATGCCCACATGTTGTATCATGTAATCTAGAACTGACTCACATCATAAAGATGATCGCACATTAGTAAAACGGTTTCCAGCAAGACTCAGGGTGTATCAACCACGCCAGATGACCCTTCAGCTTTTCAAAATGACACGAAAAAAATGTGTTGGGCCTTGATTGTCTGAAAACCTTCAGGTAACAGAGAGAAAAGCGGGGACAAAATAACATGTAAAATAAGTAGGCTACTTGACCAGCACAGATAAAATAACAAGAGTAAAAAAACAAAGCCATCTTGATAACCTCAGCAGCAAGCTTCTAGTGTCTTTCATTTCATGTGTAGAAAAAACACACCCATCTCTTTAAAACTTACCATAAACCCATAAACCCATTATCACACATTCCCCATTAACACTTCCTCTAAAAACAGCCCCATTAAAACCAACGTCATGTCCATTAGGGTACACTACAAAATCTTTTCCAAACATTCTGCAACGGAAAGTGAAAATAAGGGTTCCTTATTGGAcaaagtccaggtagtccctcccagTTTGAATCCGTCCTGTtctatttggtgcctaatgaacatgacccagaacAAAATGTCCCAATTCACGCTCAATAAAGAAGACTTGTATCAGACTGGGCAACACTGAAGGTACTGTAAGAGAATCCCCTATCGACACAGTCACTATAAATTTCCCTCTTCAACAAAGCAAAAACCATCTCAGACTTCCAGAAAATCTTTCAACAACGTTAGCGTCCCAACCAATATCCACCCAAAACCCATtccagttaaaaaaaaatacagttataaTCACATCATTGTACTATCAAACCTCAAAAGGCCAAACCAGGCAGGTGAAATATGACATTGTACACATTGAGGAGTTCAAACAGTCAATACACAAATCTCagacaataaaaataaatagtcGTCTCAAAATGAAGCCCTACATCTCTCCCAAACACGAATACCGTTACAGAAAGGTTGGTTTGTTCAGCTCGTATTTGTTCATCATCATCCAATATGTATCGACCTGTATTTGTATGATATAGATTCAAGAAAACCCTGAGCCAGTGTTTCTCCAACACCACCACATGCACTACTATAAAGTGGagagcactacttttggccaatagtgcactatatagggaacgggGGCTTCATTTGAGCTAACAGACAGTATCAGTAAACCCAATGGCCTTGAGACACCATAAGAGCTGTGGGGTATTCCAGAAAGCAGGGTTAATACATCAACCAGCTAACTTTGATTAACAGCCTTTGCCTCATATCTCCGGATTTCCTGGTTGATTAAAATGATCTACATTTGTATAATAgttgtttctgttgttgttgctgttgagtCATTTCAAACCATTTCAAGCAATTTGGGTCAGTttgctggctaactcattgatcaaGCTTTTTGGAACAGGCTCCAAACGAATGTGACTGGTGCTAATCAGCATTTTGTAGGAGGATATAATCATGCCAtcagtgtgctgtgtgtgtagggCAACCATTTGGGATTTAAAATATTAGTACAATTAGAACCACATTTTCAGATGAGTAGTACGAACACCAGATTCAGAAAACACAAACAAGATACTTACATATAGTACAATATAGGCTCAGCTAGCGGTCAACGGTAAAAGTATCTATGTAGGCTCAGCTAGCGGTCAACGGTAAAAGTACCTATGTAGGCTCAGCTAGTGGTCAACATTAAAAGTATCTATGTAGGCTCAGCTAGCGGTCAACAGTAAAAGTATCTATGTAGGCTCAGCTAGCTAGTGGTCAACTGTAAAAGTATCTATGTAGGCTCAGCTAGTGGTCAACTGTAAAAGTATCTATGTAGGCTCAGCTAGTGGTCAACTATAAAAGTATCTATGTAGGCTCAGCTAGTGGTCAACTATAAAAGTATCTATGTAGGCTCAGCTAGTGGTCAACTATAAAAGTATCTATGTAGGCTCAGCTAGCTAGCGGTCAACTGTAAAAGTATCTATGTAGGCTCAGCTAGTGGTCAACTGTAAAAGTATCTATGTAGGCTCAGCTAGCTAGCGGTCAACTATAAAAGTATCTATGTAGGCTCAGCTAGCGGTCAACGGTAAAAGTATCTATGTAGGCTCAGCTAGCTAGCGGTCAACGGTAAAAGTATCTATGTAGGCTCAGCTAGCTAGCGGTCAACTATAAAAGTATCTATGTAGGCTCAGCTAGCTAGCGGTCAACTATAAAAGTATCTATGTAGGCTCAGCTAGCTAGCGGTCAACTATAAAAGTATCTATGTAGGCTCAGCTAGCTAGCGGTCAACTATAAAAGTATCTATGTAGGCTCAGCTAGCGGTCAACGGTAAAAGTATTTATGTAGGCTCAGCTAGTGGTCAAATGTAAAAGTGTCTAACAAAACTGTTTCAAGTTATGAGTGGCACTCAGACCCCAAACAGACCAAAGAAAGCTCCCTTCTGTCCCTGCCTCCACACTTAACAGAGTTGGTCTTGTACTTTCCTGGGTTACGTCCCAATAATCTCTCCccctgaagtgtgcactcattCACTACTCCACACACAATGTAAAAGTCTTGGATTGTGTAGGCATGGGTTAGAAGGAGTTTCCATATTAGGTATtccagtcatttcctttcaaacacattaagggaagtgaacaagtgcacacttcaggagaaataATAGATTATTGGGATGCAACCCCATGTCTGGCTGGGGACTAATGTTGTATTCGTCACAGATTTAGAAAGTTACAATATAGTTTACTTgataaaagaagaaaaaaaggacACAGAAAAAGTCAAGTCCAGTGTTGCTAGTACCAATCCTCTACATGGACGTttctagggagggagagaaacacattctggagatggatggaga

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1300351 True 3528 lncRNA 0.40 2 7756937 7761076

Neighbor

gene id symbol gene type direction distance location
LOC118938522 LOC106591490 coding downstream 20461 7734045 ~ 7736476 (-)
LOC110493317 LOC106591490 coding downstream 23064 7714373 ~ 7733873 (-)
LOC118938175 LOC106564328 coding downstream 58571 7672772 ~ 7698366 (-)
LOC118938176 LOC106592614 coding downstream 67031 7682966 ~ 7689906 (-)
LOC110494997 LOC106598058 coding downstream 85078 7625152 ~ 7671859 (-)
LOC118938183 LOC106591333 coding upstream 164857 7925933 ~ 8006473 (-)
LOC110485610 hoga1 coding upstream 297865 8058941 ~ 8080347 (-)
LOC110518530 LOC106591329 coding upstream 337433 8098509 ~ 8119143 (-)
LOC110485578 LOC105012087 coding upstream 419405 8180481 ~ 8201020 (-)
LOC110485582 LOC106591223 coding upstream 464222 8225298 ~ 8262940 (-)
G1140526 NA non-coding downstream 5934 7750794 ~ 7751003 (-)
G1140368 LOC106591490 non-coding downstream 26444 7659697 ~ 7730493 (-)
G1140504 NA non-coding downstream 46070 7696547 ~ 7710867 (-)
LOC118938521 NA non-coding downstream 57092 7578674 ~ 7699845 (-)
G1140375 NA non-coding downstream 58967 7648113 ~ 7697970 (-)
G1140558 NA non-coding upstream 68047 7829123 ~ 7829555 (-)
G1140559 NA non-coding upstream 72295 7833371 ~ 7833723 (-)
G1140560 NA non-coding upstream 75400 7836476 ~ 7836694 (-)
G1140561 NA non-coding upstream 76962 7838038 ~ 7838248 (-)
G1140563 NA non-coding upstream 82309 7843385 ~ 7843779 (-)
G1140367 LOC106601621 other downstream 61191 7409260 ~ 7695746 (-)
LOC110493310 LOC106591489 other downstream 252238 7490185 ~ 7534632 (-)
G1140343 NA other downstream 510287 7245712 ~ 7246650 (-)
G1140323 NA other downstream 564694 7190696 ~ 7192243 (-)
G1141490 NA other upstream 570059 8331135 ~ 8332518 (-)
G1141517 NA other upstream 665537 8426613 ~ 8452319 (-)
G1141579 NA other upstream 829889 8590965 ~ 8592898 (-)
ncf4 p40phox other upstream 898483 8655106 ~ 8696718 (-)

Expression


Co-expression Network