XLOC_030484 (fzd9a)


Basic Information

Item Value
gene id XLOC_030484
gene name fzd9a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 56023186 ~ 56027776 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059546
tacattttctgttttatatttATTGGGATTGGACTTTTCCAGATTATGATTGCTGCATCTACCCTGGAGATCGGAGCATATGATTTGGAGCATGGCCGTCCGGGGAAATGCGAACCCATCACCATTCCCATGTGCCAGGGAATTGGCTACAACATGACACGGATGCCTAACCTGTTGAATTATGAAAGTCAAGAGGAAGCAAGCATAAAGCTGAATGAATTCGCTCCTCTGGTGAAGTACGGATGTGACATCCATCTGCAATTTTTCCTGTGCTCATTATATGTGCCAATGTGTGCTGAACAAGTGTCCGCCTCTATTCCAGCATGCCGTCCTATGTGTGAACAGGCACGACAAAGATGTTCACCCATAATGGAACAATTTAGTTTCAGTTGGCCGGACTCATTGGATTGCTCAAAACTCCCGACCAACAATGACCCAAATGCTCTGTGCATCGAAGCTCCAGAAAATGACACTCAACCTGAGACAAAAAAAGGTGAGGGCATGTTGCCAGTACCTCCAAGGTCCAGGCAACCCACAACAGTTAGTGGACGCATCTCAAGCATCTCACAGTCCTGTGAAAACCCAGAGAAGTTCCAGTATGTGGACAAGAGCGAGTCCTGCGCGCCTCGTTGCACTCCTACAGTGGATGTCTACTGGTCGAGGCAAGATAAGGACTTTGCATTCATTTGGATGGTCGTGTGGTCAacgctttgttttgtttctacaGCATTCACAGTTCTAACCTTTCTCCTTGACCCCCAACGTTTTCAGTACCCCGAGCGTCCAATCATCTTCCTCTCCATGTGTTACAACATCTACTCAGTGGCCTTCATCATCCGTTCAGTGGCTGGGGCTGAGAATATCGCATGTGATCGAGAAAACGGAGAGCTCTACATTATACGCGAAGGTCTAGAAAGCACAGGCTGCACCATAGTCTTCCTCATCCTTTATTACTTTGGGATGGCCAGCTCCATCTGGTGGGTGATCCTCACCCTCACCTGGTTTCTCGCAGCGGGACGAAAATGGGGCCATGAGGCCATCGAAGCACACAGCAGCTACTTCCATATGGCCGCCTGGGGTATTCCTGCAGTGAAGACCATAGTCATCCTCACTATGAGAAAGGTGGCTGGGGATGAGTTGACAGGATTGTGTTACGTGGGAAGCATGGACAGTAGCGCTCTCACTGGCTTTGTGCTGATCCCTCTTTCTTGCTATCTCATCGTCGGGACGTCGTTCATCCTCACGGGTTTCGTGGCGCTCTTCCACATTCGCAAAATTATGAAAACCGGTGGCACCAACACTGAAAAGCTGGAAAAGCTCATGGTTAAGATCGGAGTCTTTTCCATTCTCTACACAGTTCCTGCGACTATTGTGATCATATGCTATttctatgaaagactcaatatggAATACTGGAAGTTTAGAGCTCTGGAGAACAAGTGCGTGTCCTTTCCTGGCCGCAGGAGCGATGATTGCTCCCTGGACTCATCGGTTCCTACAGTAGCTGTGTTCATGCTGAAAATATTTATGTCGCTAGTGGTGGGCATCACCAGCGGGGTTTGGGTATGGAGCTCAAAGACACTTCAGACCTGGCAGGGCTTGTACAACAGGAGGTTGGGTGTGCAGACCAGCCATAAGCCCTGTTCCAGCGTCAGCTGCAGCAACTCCCACTGCCATTACAAAGCACCGGCTGTGACAATTCACATGAACAAAACGGACGCCTATACAGACAGTCCCACACATGTTTAA
>TCONS_00059547
ATGGGACATTGCATGAAGATTGGGATTGGACTTTTCCAGATTATGATTGCTGCATCTACCCTGGAGATCGGAGCATATGATTTGGAGCATGGCCGTCCGGGGAAATGCGAACCCATCACCATTCCCATGTGCCAGGGAATTGGCTACAACATGACACGGATGCCTAACCTGTTGAATTATGAAAGTCAAGAGGAAGCAAGCATAAAGCTGAATGAATTCGCTCCTCTGGTGAAGTACGGATGTGACATCCATCTGCAATTTTTCCTGTGCTCATTATATGTGCCAATGTGTGCTGAACAAGTGTCCGCCTCTATTCCAGCATGCCGTCCTATGTGTGAACAGGCACGACAAAGATGTTCACCCATAATGGAACAATTTAGTTTCAGTTGGCCGGACTCATTGGATTGCTCAAAACTCCCGACCAACAATGACCCAAATGCTCTGTGCATCGAAGCTCCAGAAAATGACACTCAACCTGAGACAAAAAAAGGTGAGGGCATGTTGCCAGTACCTCCAAGGTCCAGGCAACCCACAACAGTTAGTGGACGCATCTCAAGCATCTCACAGTCCTGTGAAAACCCAGAGAAGTTCCAGTATGTGGACAAGAGCGAGTCCTGCGCGCCTCGTTGCACTCCTACAGTGGATGTCTACTGGTCGAGGCAAGATAAGGACTTTGCATTCATTTGGATGGTCGTGTGGTCAacgctttgttttgtttctacaGCATTCACAGTTCTAACCTTTCTCCTTGACCCCCAACGTTTTCAGTACCCCGAGCGTCCAATCATCTTCCTCTCCATGTGTTACAACATCTACTCAGTGGCCTTCATCATCCGTTCAGTGGCTGGGGCTGAGAATATCGCATGTGATCGAGAAAACGGAGAGCTCTACATTATACGCGAAGGTCTAGAAAGCACAGGCTGCACCATAGTCTTCCTCATCCTTTATTACTTTGGGATGGCCAGCTCCATCTGGTGGGTGATCCTCACCCTCACCTGGTTTCTCGCAGCGGGACGAAAATGGGGCCATGAGGCCATCGAAGCACACAGCAGCTACTTCCATATGGCCGCCTGGGGTATTCCTGCAGTGAAGACCATAGTCATCCTCACTATGAGAAAGGTGGCTGGGGATGAGTTGACAGGATTGTGTTACGTGGGAAGCATGGACAGTAGCGCTCTCACTGGCTTTGTGCTGATCCCTCTTTCTTGCTATCTCATCGTCGGGACGTCGTTCATCCTCACGGGTTTCGTGGCGCTCTTCCACATTCGCAAAATTATGAAAACCGGTGGCACCAACACTGAAAAGCTGGAAAAGCTCATGGTTAAGATCGGAGTCTTTTCCATTCTCTACACAGTTCCTGCGACTATTGTGATCATATGCTATttctatgaaagactcaatatggAATACTGGAAGTTTAGAGCTCTGGAGAACAAGTGCGTGTCCTTTCCTGGCCGCAGGAGCGATGATTGCTCCCTGGACTCATCGGTTCCTACAGTAGCTGTGTTCATGCTGAAAATATTTATGTCGCTAGTGGTGGGCATCACCAGCGGGGTTTGGGTATGGAGCTCAAAGACACTTCAGACCTGGCAGGGCTTGTACAACAGGAGGTTGGGTGTGCAGACCAGCCATAAGCCCTGTTCCAGCGTCAGCTGCAGCAACTCCCACTGCCATTACAAAGCACCGGCTGTGACAATTCACATGAACAAAACGGACGCCTATACAGACAGTCCCACACATGTTTAA

Function

symbol description
fzd9a Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway and non-canonical Wnt signaling pathway. Predicted to act upstream of or within cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human FZD9 (frizzled class receptor 9).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-77 Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway and non-canonical Wnt signaling pathway. Predicted to act upstream of or within cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human FZD9 (frizzled class receptor 9).

Ensembl:

ensembl_id ENSDARG00000035185

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059546 False 1749 mRNA 0.49 2 56023186 56027776
TCONS_00059547 True 1746 mRNA 0.49 1 56026031 56027776

Neighbor

gene id symbol gene type direction distance location
XLOC_030483 fkbp6 coding upstream 33413 55984270 ~ 55989773 (+)
XLOC_030482 tmem150ab coding upstream 71058 55934129 ~ 55952128 (+)
XLOC_030481 NA coding upstream 116473 55905133 ~ 55906713 (+)
XLOC_030480 NA coding upstream 304048 55717725 ~ 55719138 (+)
XLOC_030478 ntrk2b coding upstream 333530 55626693 ~ 55689656 (+)
XLOC_030485 NA coding downstream 66154 56093930 ~ 56094196 (+)
XLOC_030486 mrm1 coding downstream 92199 56119975 ~ 56125769 (+)
XLOC_030487 NA coding downstream 157089 56184865 ~ 56185944 (+)
XLOC_030488 CR753837.2 coding downstream 218960 56246736 ~ 56248735 (+)
XLOC_030489 CR753837.1 coding downstream 228412 56256188 ~ 56258166 (+)
XLOC_030479 BX323563.1 non-coding upstream 351604 55671466 ~ 55671582 (+)
XLOC_030475 NA non-coding upstream 868937 55146633 ~ 55154249 (+)
XLOC_030474 NA non-coding upstream 883049 55134605 ~ 55140137 (+)
XLOC_030490 BX255908.1 non-coding downstream 230655 56258431 ~ 56259830 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_01293199_01294944 FZD9B, FZD9 coding CI01000059 null 1292871 ~ 1295299 (+)
bowfin (Amia calva) AMCG00016392 fzd4,LOC107600811,LOC107551868 coding CM030122.1 CM030122.1 18086767 ~ 18091557 (-)