G1141516 (LOC106605911)


Basic Information

Item Value
gene id G1141516
gene name LOC106605911
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 8398205 ~ 8455438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1301603
GTATATATGTTCCATCATCATAATACTCTCATGTCAACAAACTGATATTTCTTCTTTGTTCAACTTATTTTAAAATAGACCCTATAGGCATTAGCTCTGTCATTGTTTTACTTTGTTAATATATCAGTGACTTAAAGGAGGCCACATTCACTGTTTGACAAAAAGGAAGAGCGTGAGAACCAATGGAGGATGAACGCATTTATTAACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCAAGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTTCTCAAGGATAAACAAACACTGGCCACTCATCACATTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTGACAAGAAGTAAGAAACACGTTCAGATAAGCGATTAAATAAGCGTTATAGTACCATGCTTGACAGTCTCAATATCAACGCCAAGTTAATGTCATACATCGAATCGAATAAGAGTGCAGCTGTATAGTCTTGTGCAGATTTGTTTTTTGCTAAAGTTTAGTCTAAAGACACAACTAAAAATTGGCCTAAACCAATCACTTAGGAAAcacatttcaattcaggaagtaaactgaaatgtcAGATTTtctcaatgcttttcaatgaggaacaattggaattggaattttcCTAAatggaaatggaattgaccccaaccctgagtGCAACTTTTCAAAATGTCCATTGTTACACCATATTATGAGTTCAAGGAAATGCACTTTGTCCTGAAGGAGGTTGCTGAGGTGAGAACGggtcataataatggctggaacgaggCAAGTagaatggaaaccatgtgtttgatgtattttataccattccacttattccgctccgGCAATTACCACGAGTCcatcctccccaatgaaggtgccaccatcCCCCTGTGCTTCAGCTATTGATGGAGGGAGTTCTCAAGGACAATGAGTTGTCACTAGGGGGTCAACCGTTTTGCTTATTGATCACATCATTGTCTACTCTTCCAATAAACAGCAGCATATGAATGCCCTTGATGATGTCTGTGAGTTCAGTGTTCTTGACTCTGTTGTAATGGCAGAAAACATTCACCGGGTGGCAGCACTGGGGCGGCTGAATTTCACAGCAGCATACTGGACATCCTCGTCCTGAATCTGGGGCTGAGGCAGCTGGAcggtggagtatagagacactTCCTGGTTTTTGGAGCCAGAGAAGTGGACGCTGGCATAGTGAACATCATCCTGGTTGTCTGTGTCAGCTGTCTGTGCTGCAGTAGAGGTCATGGCCATGCTTGAGATGTTGTCATACACTGGACTAGAGTCTCCCTGATGGAGAAAGAGGACAGACAACATGAGGAGTGGAAAGTTCCACAAAGAAGACACAGTCATGTTCTGTTTCCAACAGACTCACCTGTACATTCTCTGATGTGTCT
>TU1301606
GTATATATGTTCCATCATCATAATACTCTCATGTCAACAAACTGATATTTCTTCTTTGTTCAACTTATTTTAAAATAGACCCTATAGGCATTAGCTCTGTCATTGTTTTACTTTGTTAATATATCAGTGACTTAAAGGAGGCCACATTCACTGTTTGACAAAAAGGAAGAGCGTGAGAACCAATGGAGGATGAACGCATTTATTAACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCAAGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTTCTCAAGGATAAACAAACACTGGCCACTCATCACATTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTGACAAGAAGTAAGAAACACGTTCAGATAAGCGATTAAATAAGCGTTATAGTACCATGCTTGACAGTCTCAATATCAACGCCAAGTTAATGTCATACATCGAATCGAATAAGAGTGCAGCTGTATAGTCTTGTGCAGATTTGTTTTTTGCTAAAGTTTAGTCTAAAGACACAACTAAAAATTGGCCTAAACCAATCACTTAGGAAAcacatttcaattcaggaagtaaactgaaatgtcAGATTTtctcaatgcttttcaatgaggaacaattggaattggaattttcCTAAatggaaatggaattgaccccaaccctgagtGCAACTTTTCAAAATGTCCATTGTTACACCATATTATGAGTTCAAGGAAATGCACTTTGTCCTGAAGGAGGTTGCTGAGGTGAGAACGGGTCATAAGAATGGCTGGAACGAGGCAAGTagaatggaaaccatgtgtttgatgtattttataccattccacttattccgctccggcaattaccacgagcccatcctccccaatgaaggtgccaccatcCCCCTGTGCTTCAGCTATTGATGGAGGGAGATCTCAGGGAACAATGAGTTGTCACTAGGGGGTCAACTGTTTTGCTTATTGATGACATCATTGTCTACTCTTTCAATAAACAGCAGCATATGAATGCCCTTGATGATGTCTGTGAGTTCAGTGTTCTAGTATTGACTCTGTTGTAATGGCAGAAAACATTCACCGGGTGGCAGCACTGGGGCGGCTGAATTTCACAGCAGCATACTGGACATCCTCGTCCTGAATCTGGGGCTGAGGCAGCTGGAcggtggagtatagagacactTCCTGGTTTTTGGAGCCAGAGAAGTGGACGCTGGCATAGTGAACATCATCCTGGTTGTCTGTGTCAGCTGTCTGTGCTGCAGTAGAGGTCATGGCCATGCTTGAGATGTTGTCATACACTGGACTAGAGTCTCCCTGATGGAGAAAGAGGACAGACAACATGAGGAGTGGAAAGTTCCACAAAGAAGACACAGTCATGTTCTGTTTCCAACAGACTCACCTGTACATTCTCTGATGTGTCT
>TU1301604
GTATATATGTTCCATCATCATAATACTCTCATGTCAACAAACTGATATTTCTTCTTTGTTCAACTTATTTTAAAATAGACCCTATAGGCATTAGCTCTGTCATTGTTTTACTTTGTTAATATATCAGTGACTTAAAGGAGGCCACATTCACTGTTTGACAAAAAGGAAGAGCGTGAGAACCAATGGAGGATGAACGCATTTATTAACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCAAGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTTCTCAAGGATAAACAAACACTGGCCACTCATCACATTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCAAGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTTCTCAAGGATAAACAAACACTGGCCACTCATCACATTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTGACAAGAAGTAAGAAACACGTTCAGATAAGCGATTAAATAAGCGTTATAGTATCATGCTTGACAGTCTCAATATCAATGCCAAGTTAATGTCATACATCGAATCGAATAAGAGTGCAGCTGTATAGTCTTGTGCAGATTTGTTTTTTGCTAAAGTTTAGTCTAAAGACACAACTAAAAATTGGCCTAAACCAATCACTTAGGAAAcacatttcaattcaggaagtaaactgaaatgtcAGATTTtctcaatgcttttcaatgaggaacaattggaattggaattttcCTAAatggaaatggaattgaccccaaccctgagtGCAACTTTTCAAAATGTCCATTGTTACACCATATTATGAGTTCAAGGAAATGCACTTTGTCCTGAAGGAGGTTGCTGAGGTGAGAACGGGTCATAAGAATGGCTGGAACGAGGCAAGTagaatggaaaccatgtgtttgatgtattttataccattccacttattccgctccggcaattaccacgagcccatcctccccaatgaaggtgccaccatcCCCCTGTGCTTCAGctattgatcaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtaacgaaatgcttgtgcttctagttccgacaatgcagtaataacaagtaatttaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaataagtgatggtacagagcagcataggcaagatacagtagatggtctcgagtacagtatgtacaaatgagatgagtatgtaaacaaagtggcatagtatagtataaagtggctagtgatacatgtattacataaggataccgtcgatgctatagagtacagtatatacgtatgcatatgagatgaataatgtagggtaagtaacatttatataaggtagcattgtttaaagtggctagtgatatatttacataatttcccatcaattcccattattaaagtggctggagttgagtcagtgtcagtgtgttggcagcagccactcagtgttagtggtggctgtttaacagtctgatggccttgagatagaagctgtttttcagtctctcggtcc
>TU1301605
GTATATATGTTCCATCATCATAATACTCTCATGTCAACAAACTGATATTTCTTCTTTGTTCAACTTATTTTAAAATAGACCCTATAGGCATTAGCTCTGTCATTGTTTTACTTTGTTAATATATCAGTGACTTAAAGGAGGCCACATTCACTGTTTGACAAAAAGGAAGAGCGTGAGAACCAATGGAGGATGAACGCATTTATTAACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCAAGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTTCTCAAGGATAAACAAACACTGGCCACTCATCACATTTTCTCAAGGATAAACAAACACTGGCCACTCATCACCTTTTCTCATGGATAAACAAACACTGGCCACTCATCACATTTTCTCAAGGATAAACAAACACTGGCCACTCATCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1301603 False 1545 lncRNA 0.42 3 8398205 8455438
TU1301606 False 1551 lncRNA 0.42 3 8398205 8455438
TU1301604 False 1957 lncRNA 0.38 3 8401614 8455438
TU1301605 True 549 lncRNA 0.38 2 8402794 8455438

Neighbor

gene id symbol gene type direction distance location
atpv0e2 va0e2 coding downstream 128515 8265675 ~ 8269763 (-)
LOC110485582 LOC106591223 coding downstream 135265 8225298 ~ 8262940 (-)
LOC110485578 LOC105012087 coding downstream 197185 8180481 ~ 8201020 (-)
LOC110518530 LOC106591329 coding downstream 279062 8098509 ~ 8119143 (-)
LOC110485610 hoga1 coding downstream 317858 8058941 ~ 8080347 (-)
ncf4 p40phox coding upstream 199668 8655106 ~ 8696718 (-)
LOC110515367 LOC106591437 coding upstream 273785 8729223 ~ 8738426 (-)
LOC110515366 pla2g6 coding upstream 283297 8738735 ~ 8787152 (-)
LOC118938524 LOC106590932 coding upstream 414583 8870021 ~ 8872667 (-)
LOC118938192 NA coding upstream 418596 8874034 ~ 8878068 (-)
G1141504 NA non-coding downstream 19383 8377561 ~ 8378822 (-)
G1141462 NA non-coding downstream 27746 8293489 ~ 8370459 (-)
G1141460 NA non-coding downstream 37657 8358470 ~ 8360548 (-)
G1141476 NA non-coding downstream 57860 8338935 ~ 8340345 (-)
G1141461 NA non-coding downstream 96612 8276630 ~ 8301593 (-)
G1141530 NA non-coding upstream 8507 8463945 ~ 8464368 (-)
G1141531 NA non-coding upstream 16615 8472053 ~ 8474297 (-)
G1141532 NA non-coding upstream 19599 8475037 ~ 8475885 (-)
G1141540 LOC106591278 non-coding upstream 49484 8504922 ~ 8516728 (-)
G1141580 NA non-coding upstream 143958 8599396 ~ 8599690 (-)
G1141490 NA other downstream 65687 8331135 ~ 8332518 (-)
G1140367 LOC106601621 other downstream 702459 7409260 ~ 7695746 (-)
G1141579 NA other upstream 135527 8590965 ~ 8592898 (-)
G1141636 cbx6 other upstream 338419 8793857 ~ 8797212 (-)
LOC110494947 NA other upstream 504869 8960307 ~ 8972481 (-)

Expression


Co-expression Network