G1141540 (LOC106591278)


Basic Information

Item Value
gene id G1141540
gene name LOC106591278
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 8504922 ~ 8516728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1301635
ccgacttcaactgtactccTCCACACAATGACTCTTAGATTCACCCTTTTATCGAGGATGATCAATTCAAGTATCATGTGGAGCTAATGTCTGTCAATACAATGTTATAATACCAAACTAAAGGTTTAAACTTACATCTGACCGTGAGAGTCTCTTCAGCAGAGGGAGATCCTCATGGCCTTCTACAGCACAGGAGTATCTGCCTGTATCCTCACTGCTGACTGAGAATAGGCTATAGACAGGAGAGTAGgtgtTGCTGTTTGGTATAGGCTGTCCATTCTTATACCAAATAAATGCTGCGATTGGGTCCAGCGTACAtttggttctacatgtcagtgtgaCACTCTCACTCTCTGACACAGATGTAGGAACCATCTCCAACACAACATCTAgagtaaaaataaaacaattaatattGTCCTCCTAtccagtgcattcgaaaagtattcagaccccttga

Function

NR:

description
PREDICTED: B-cell receptor CD22-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1301635 True 460 lncRNA 0.42 2 8504922 8516728

Neighbor

gene id symbol gene type direction distance location
atpv0e2 va0e2 coding downstream 235232 8265675 ~ 8269763 (-)
LOC110485582 LOC106591223 coding downstream 241982 8225298 ~ 8262940 (-)
LOC110485578 LOC105012087 coding downstream 303902 8180481 ~ 8201020 (-)
LOC110518530 LOC106591329 coding downstream 385779 8098509 ~ 8119143 (-)
LOC110485610 hoga1 coding downstream 424575 8058941 ~ 8080347 (-)
ncf4 p40phox coding upstream 138378 8655106 ~ 8696718 (-)
LOC110515367 LOC106591437 coding upstream 212495 8729223 ~ 8738426 (-)
LOC110515366 pla2g6 coding upstream 222007 8738735 ~ 8787152 (-)
LOC118938524 LOC106590932 coding upstream 353293 8870021 ~ 8872667 (-)
LOC118938192 NA coding upstream 357306 8874034 ~ 8878068 (-)
G1141532 NA non-coding downstream 29037 8475037 ~ 8475885 (-)
G1141531 NA non-coding downstream 30625 8472053 ~ 8474297 (-)
G1141466 NA non-coding downstream 32984 8415698 ~ 8471938 (-)
G1141464 LOC106605908 non-coding downstream 34679 8365977 ~ 8470243 (-)
G1141530 NA non-coding downstream 40554 8463945 ~ 8464368 (-)
G1141580 NA non-coding upstream 82668 8599396 ~ 8599690 (-)
G1141582 NA non-coding upstream 90777 8607505 ~ 8612332 (-)
G1141588 NA non-coding upstream 103187 8619915 ~ 8620219 (-)
G1141589 NA non-coding upstream 103930 8620658 ~ 8620928 (-)
G1141591 NA non-coding upstream 150633 8667361 ~ 8668046 (-)
G1141517 NA other downstream 52603 8426613 ~ 8452319 (-)
G1141490 NA other downstream 172404 8331135 ~ 8332518 (-)
G1140368 LOC106591490 other downstream 844601 7659697 ~ 7730493 (-)
LOC110493310 LOC106591489 other downstream 1000223 7490185 ~ 7534632 (-)
G1141579 NA other upstream 74237 8590965 ~ 8592898 (-)
G1141636 cbx6 other upstream 277129 8793857 ~ 8797212 (-)
LOC110494947 NA other upstream 443579 8960307 ~ 8972481 (-)

Expression


Co-expression Network