G1141636 (cbx6)


Basic Information

Item Value
gene id G1141636
gene name cbx6
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 8793857 ~ 8797212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1301766
CTTGGAGGTGTTTTTTATTAAAAGCCTCGCACAACAGAACATATACAGAAAGCAACAACGAACGAATGTCAACATGACCACGCTCACCTTACCTGTACAATAAGGGCTCGCAAAACATGCTTCAGCTACATTATCACAACGTTACCATCGACATTATCCTCGTCATTATCATCATCGTTATTACCATTAAACAACAATTCAATGTACATCATTCATATTACCAATATTACGAGACACAAACTGCAGTCTTGATACACATttataattcattaaaaatctggGGTTTTCCATTCTTATCAAACCCATATTGGACATGAATCAAAAACAACCATAACAATCAACGGTAATTATTAAAGAAGGTAAAGCTTACACATTACACTTCATTCAAACATATATAATGAGGTACATAAGCAAAAAGCCCTGGAAATGAACCAGTTTACATGGACAAACATTTCATATTGGATTCTTCAGGTCGGCTTCTTGTCATTACATTAAAGTGCCAATGACATGGCTCTTGAAATTACAtccaaaaataaaacaaaagaaATCTAGAGCCCTGCTTGGTATAAATGTAGGCCACTATGTCAAGTTGTGCTACCTATTTATATCAACTGTTAAATCACCACCAAGAAGTACATGAACACTCCTTCTACTGGCTTAACCAATGAGTCAACAGAATCTACTGGTTTAGCCAATGACAGGCAAGAGAATCTACTGGTTTAGCCAATGACAGTCAAGATAATGTTTTTATCCATTAACAGCTGAATGAAGATGTGTTTGTGGTAGGATGTGTATTATTATCACAGTATCAAAGACTAGACGACAATCAACCATCGATCTAATACAGTATACGGACCAGATGCAGTGGAGTTGGAACTGAGCAGCTATAAGGCAACACATGCTTTTAAATATTGTAATAATATTGTACAAAtacaccagacagagagagagagagaggggggcccTATAGAAACAGGGGCAGCACCAGAAGATggtcagatctgggaccaggatatCAGAACGCCATTGAGAGGTTTGGACTACAGGTTATTCCACAGATAATATCTGGTAGGTAGGTACAGACATGATGCAGAGAATATCTGGTAGGTACAAACAGAAGTGTTCCCGGTGGATAGGTTACATACTACATCGTCATTACTCCCACTCCATGCAGTCCACAGCTTAAATAATTAGAGAGTCCGTTTAGAGTCTTGACTGAGGTTCCAGGAATACTGGACATTCCGGAATCTTGAAGGCGACAGCGAGTTAAAGGCAGGCGTTGGAACATGGCAATAAGAAAAGCAATAACTTAACTTTCTATGCTTTCCTCGCTTAGTTGTATTCTTTTTGCAGCTGAATTAACGTTGTGCGTGCATATAAATATATACTTATATCGGCCTGTGcattcgagagagagagagaggggaaaaaaagaaGGGCTTGTAATTCACATGTGGATATTGGATACGGAAATTATACAGAATagggttgttgtcaacaatggaGTCAAGTGCGTTGCTAAATATCTCAATGTAGAAATGCAGTATTGCCGAAGCCCAACAAAGCAAGTGCAACGTCATTTCATCACCTCATTTAAACCTTAAAGAGTTGGACTTCCAATGGAGAAAATGGGTATAAATATGAACAAATAACAAACACTTATCGGTTGTATGAATTTCCCTACAATAAAGATTGAATTGAACGTTATTATGACTGACGGTATCTGTTACCAGCCTCCAAACAGTCACGGTTAAGAGAGTGGACATGAATTGAATAAACTTTATTGATCCTCAGAAGAGAAATCACGCTGCATAAAGATGGACAATCAGCATTGTTACAGATGTATATTGCACGCCCTGCTCTTAGCTTCTTATAGTTCTGTTCAAAAAAATAACGCTCTTCTTCAATATTCAAATGGCCTGAATTTCATTATTATTGGAAGTTTTTTTTTAACcttctgtgttaatatagcattactccctagcctggtcccagacaatGACCACAGGAGTTGGCCAAGAAAGCACAAACACATCAGGGAGCCAGGCTAATTCATTCATCTCCACTTCTTTGATCTCTTCCTATGGCTTGGGTTGTGGGGGGTTCTTCAGTtggggtgaggaggaggtggtaTTTTCTGGGTGTATTGGTTGGGGGGAGGAGGGGCGGGATGAGGGGGAGGGGAACTCTTTGATAGTGACGGTGAGGAGGTTGGTGGTGACGTCGGTCACGACCACGTTGGCGCTGCTCGCCACCATCTCCGGGTGCCAGTCGGGGTCGCCCTCGGCGGGGACCCTCTGAGGGTTGGAGGTCAAGGGGCAGGCTCTGGCGGcagggggGTGAGGAAAGGTCCAGAGCATCAgcatcatcctcctcttcatcaaaggaggaagaggaggaaccggaagcaaaggagagggaggggaggagggggtttGGTCCTTGTTCAGCGTTCTGGTTCTTCTGGAGCTCTGGGGGGTGGCTAGGGGTAGACTGGGCAGAGGAGGCCAAAGCCTGGGTGCTCAAGTTGGGAGCCGACCCAGAGGCAGAGGCCCCAGTGGCGGGTCCGGGAGGGGTTGGATGGTTCTGGGCGGGTGTGGTGGATCCACTGGAGCTGGATGGAGAGGGGGGTGGCTGGGTGTCCCTAGCCCCTGAGGTCCCTGTGCTGGAGCCTGTAGCTGAGTGTGGAAGGTGTAGAGGTCCGGGGCCGCCACACTGGAGACCAAACGGCTTCCCGTACATGGGGAACCCCAGCATGGGCTGGAAGGGCCGGTACGgagcctctccactcctcttccctaTGATCCTATTTCGGGAGGGGATGTTCTGACGACCCCCTTGGAGGGACATGGAGCCGGATGGCGCCCTCCGGTTACCCCCGCCGCCCCTTCCTCCGCCTCCACTTCCTGGTTTGTCGATGACCTTGAGGTTTAGGATGATGCGACCCCGTTTGACCTCGCGTGGTTTGACGCGACGATTGAGGATGCGGACGGTCTCTGAGAAGGGGGAGACGGGGGGCCGCGAGGGGAACCCACTGGAGCCGGAGAAGGCCAGGGGGTCGGGGCGAGGTAAGGGGCGGCGGGACATACTAGTGCAGCGGCGAATGTCTTTCTTCAGCTTGTGTGTCGCTGCCAGGGAGTTGAGTTTAGGGGAGGGCGCTGGAGAGGCGGAGGGGAAGGAGGATGGAGGGGCtcgaggagaagaggaagaagtgGAGCGAGGCGCTCGAGGGGTGGAGGTCTCCCTCTTC

Function

symbol description
cbx6 Predicted to enable single-stranded RNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Part of PcG protein complex. Biomarker of glioblastoma.

NR:

description
chromobox protein homolog 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1301766 True 3250 TUCP 0.47 3 8793857 8797212

Neighbor

gene id symbol gene type direction distance location
LOC110515366 pla2g6 coding downstream 6705 8738735 ~ 8787152 (-)
LOC110515367 LOC106591437 coding downstream 55431 8729223 ~ 8738426 (-)
ncf4 p40phox coding downstream 97139 8655106 ~ 8696718 (-)
atpv0e2 va0e2 coding downstream 524167 8265675 ~ 8269763 (-)
LOC110485582 LOC106591223 coding downstream 530917 8225298 ~ 8262940 (-)
LOC118938524 LOC106590932 coding upstream 72809 8870021 ~ 8872667 (-)
LOC118938192 NA coding upstream 76822 8874034 ~ 8878068 (-)
LOC118938525 LOC106590989 coding upstream 88783 8885995 ~ 8888699 (-)
LOC110495146 LOC106590989 coding upstream 91625 8888837 ~ 8896570 (-)
LOC118938191 NA coding upstream 116866 8914078 ~ 8921063 (-)
G1141621 NA non-coding downstream 31779 8756925 ~ 8762078 (-)
G1141618 NA non-coding downstream 46124 8747427 ~ 8747733 (-)
G1141612 NA non-coding downstream 68655 8713268 ~ 8725202 (-)
G1141611 NA non-coding downstream 82541 8710955 ~ 8711316 (-)
G1141594 NA non-coding downstream 116993 8676611 ~ 8676864 (-)
G1141642 LOC106591467 non-coding upstream 14420 8811632 ~ 8816616 (-)
G1141644 NA non-coding upstream 21921 8819133 ~ 8819387 (-)
G1141645 NA non-coding upstream 23718 8820930 ~ 8821301 (-)
G1141646 NA non-coding upstream 24272 8821484 ~ 8823772 (-)
G1141652 NA non-coding upstream 39636 8836848 ~ 8837507 (-)
G1141579 NA other downstream 200959 8590965 ~ 8592898 (-)
G1141517 NA other downstream 341538 8426613 ~ 8452319 (-)
G1141490 NA other downstream 461339 8331135 ~ 8332518 (-)
LOC110494947 NA other upstream 163095 8960307 ~ 8972481 (-)
G1141790 NA other upstream 417928 9215140 ~ 9216298 (-)
LOC110485597 LOC106590780 other upstream 560867 9356000 ~ 9385805 (-)
G1141973 cyh2 other upstream 870033 9666379 ~ 9669182 (-)
G1142121 NA other upstream 1183136 9980348 ~ 9982266 (-)

Expression


Co-expression Network