G1141168


Basic Information

Item Value
gene id G1141168
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 9260832 ~ 9271050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1301148
cacacacacacacttgaaaccAGATGTGCAGAACCAGCCCCAGACAAGGAGCCTGAGGGCTGAGCTAACCCAAGTGTATCACGACGGGGACTAAACTCACAACAACCTGGAAGTCCCAGATCAAGTTGCATTAATCATTCTATGTAATGATTCAACAACGAATGGAGTTAAAAGATCATTAATATATAGAGAGTCACACTTTCCTTCTCCACTAGTGGCTAaacaccccaccacacacactacaccagttaggtagaggtggtgttatcatcccacactacactagaccagttagatagaggttgtgttatcatcccacactacactagaccggttagatagaggtggtgttatcatcccacactagaccagttagatagaggtggtgttatcattccacactagaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccacacaagaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttattatcccccactagaccagttagatagaggtggtgaTATCATCCcccactagaccagttaggtagaggtggtgttatcatcccccactagaccagttagatagaggtggtgttatcatctcccactagaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccacactacactagaccagttaggtagaggtggtgttatcatcccccactacactagaccagttagatagaggtggtgttatcatcccccaCTACCCTcgaccagttagatagaggtggtgttatcatcccccaCTACCCTcgaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccccaCTACACTAGGCCAGTtaggtagaggtggtgttatcatccca
>TU1301152
cacacacacacacttgaaaccAGATGTGCAGAACCAGCCCCAGACAAGGAGCCTGAGGGCTGAGCTAACCCAAGTGTATCACGACGGGGACTAAACTCACAACAACCTGGAAGTCCCAGATCAAGTTGCATTAATCATTCTATGTAATGATTCAACAACGAATGGAGTTAAAAGATCATTAATATATAGAGAGTCACACTTTCCTTCTCCACTAGTGGCTAaacaccccaccacacacactacaccagttaggtagaggtggtgttatcatcccacactacactagaccagttagatagaggttgtgttatcatcccacactacactagaccggttagatagaggtggtgttatcatcccacactagaccagttagatagaggtggtgttatcattccacactagaccagttagatagaggtggtgttatcatcccacactccactagaccagttagatagaggtggtgttatcatcccccaCTAGatcagttagatagaggtggtgttatcatccccactagaccagttaggtagtggtggtgttatcatcctacactagaccagttaggtagaggtggtgttatcatcgcacactagaccagttagaggtggtgttatcatcccacactccactagaccagttagatagaggtggtgttatcatcccccaCTAGatcagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggcgttatcatcccacactccactagaccagttagatagaggtggtgttatcatcccccaCTAGatcagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccccactacactagacca
>TU1301153
cacacacacacacttgaaaccAGATGTGCAGAACCAGCCCCAGACAAGGAGCCTGAGGGCTGAGCTAACCCAAGTGTATCACGACGGGGACTAAACTCACAACAACCTGGAAGTCCCAGATCAAGTTGCATTAATCATTCTATGTAATGATTCAACAACGAATGGAGTTAAAAGATCATTAATATATAGAGAGTCACACTTTCCTTCTCCACTAGTGGCTAaacaccccaccacacacactacaccagttaggtagaggtggtgttatcatcccacactacactagaccagttagatagaggttgtgttatcatcccacactacactagaccggttagatagaggtggtgttatcatcccacactagaccagttagatagaggtggtgttatcattccacactagaccagttagatagaggtggtgttatcatcccacactccactagaccagttagatagaggtggtgttatcatcccccaCTAGatcagttagatagaggtggtgttatcatccccactagaccagttaggtagtggtggtgttatcatcctacactagaccagttaggtagaggtggtgttatcatcgcacactagaccagttagaggtggtgttatcatcccacactccactagaccagttagatagaggtggtgttatcatcccccaCTAGatcagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccccactacactag
>TU1301150
tcatcccccactacactagaccagttagatagaggtggtgttatcatcccccaCTAGatcagttagatagaggtggtgttatcatcccacactacactagaccagttagaggtggcgttatcatcccacactccactagaccagttagatagaggtggtgttatcatcccccaCTAGatcagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccccactacactagacca
>TU1301149
cactacactagaccagttagatagaggtggtgttatcatcccacactagaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttattatcccccactagaccagttagatagaggtggtgttattatcccccactagaccagttagatagaggtggtgaTATCATCCcccactagaccagttaggtagaggtggtgttatcatcccccactagaccagttagatagaggtggtgttatcatctcccactagaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccacactacactagaccagttaggtagaggtggtgttatcatcccccactacactagaccagttagatagaggtggtgttatcatcccccaCTACCCTcgaccagttagatagaggtggtgttatcatcccccaCTACCCTcgaccagttagatagaggtggtgttatcatcccacactacactagaccagttagatagaggtggtgttatcatcccccaCTACACTAGGCCAGTtaggtagaggtggtgttatcatccca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1301148 False 1100 lncRNA 0.46 4 9260832 9271050
TU1301152 False 890 lncRNA 0.45 5 9260832 9263468
TU1301153 False 762 lncRNA 0.45 4 9260832 9262118
TU1301150 False 267 lncRNA 0.46 2 9261775 9263468
TU1301149 True 701 lncRNA 0.46 2 9268963 9271050
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110487257 tmprss6 coding upstream 37941 9208432 ~ 9222891 (+)
LOC110495071 LOC106564380 coding upstream 57635 9192677 ~ 9203197 (+)
LOC110495073 LOC106564390 coding upstream 85855 9123538 ~ 9175830 (+)
LOC110513456 LOC106564390 coding upstream 87542 9156337 ~ 9173290 (+)
LOC110494915 LOC106564391 coding upstream 137692 9120078 ~ 9123140 (+)
LOC118938198 cacng2 coding downstream 147463 9418513 ~ 9512130 (+)
LOC118938199 NA coding downstream 177353 9448403 ~ 9449765 (+)
LOC118936367 LOC106564430 coding downstream 274236 9545143 ~ 9562471 (+)
cuta cuta coding downstream 291704 9562754 ~ 9568616 (+)
LOC110494920 LOC106596927 coding downstream 342462 9613512 ~ 9614354 (+)
G1141160 NA non-coding upstream 58783 9201481 ~ 9202049 (+)
G1141158 NA non-coding upstream 62129 9198409 ~ 9198703 (+)
G1141154 NA non-coding upstream 65832 9164369 ~ 9195000 (+)
G1141152 NA non-coding upstream 68574 9162083 ~ 9192258 (+)
G1141194 NA non-coding downstream 60973 9332023 ~ 9333973 (+)
G1141205 NA non-coding downstream 82973 9354023 ~ 9357118 (+)
G1141231 NA non-coding downstream 132929 9403979 ~ 9405457 (+)
G1141275 LOC106564432 non-coding downstream 249371 9520421 ~ 9522122 (+)
G1141283 NA non-coding downstream 270286 9541336 ~ 9541809 (+)
G1141017 LOC106564394 other upstream 165352 9049219 ~ 9095480 (+)
LOC110487255 LOC106591397 other upstream 420037 8828237 ~ 8840946 (+)
cbx6a cbx6 other upstream 466787 8790681 ~ 8810954 (+)
G1140953 NA other upstream 565957 8641148 ~ 8694875 (+)
LOC118938189 LOC106591430 other upstream 673643 8570729 ~ 8594285 (+)
G1141316 NA other downstream 352549 9623599 ~ 9624826 (+)
LOC118938200 cyh2 other downstream 383063 9653992 ~ 9668271 (+)
LOC118938204 NA other downstream 740277 10011327 ~ 10015855 (+)

Expression

G1141168 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 10.
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G1141168 Expression in each Bioproject

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G1141168 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network