G1141973 (cyh2)


Basic Information

Item Value
gene id G1141973
gene name cyh2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 9666379 ~ 9669182 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1302243
GCATGATGTACATAGAACAGGTATGATAAACCAGACACAGAGGTCttataaatggcaccctgttccctatttagtgcaccacttttgaccagggtccataaggctctggtggaaagtagtgcactgtatagagaatagtgcaccatttgggacacagacaaagagtcataCAAGGACAGTAGGTGGAATCAGCCATGCTTGAGATCGTATCTATCTGCAGTATGTACATGAGAAACCGCTCTCTTGGCTTGGCTTCTGTCACCACCTCAACAAACAGTATGTACAGGTCACGTTGACAGCTGTTGACAATGACAGTATTTCATCTCACAGGGTAAGAAGGAAGTCCTTTGACACGGCGGTGGTTGAAAATGAGAAGTCCCTCTTCCAGACAGAACACAGTTCCACCCTTTTAATCCAGATAAAAGTCCAAATCAGTCCCCAGCAGTCTTCTCAGGAACTCTTCTTGCAACAAAACAAATTATCCCTCAATTCTCATTATGACAAAAGTTCATTTCTAATTCCTTTTTAAGGTACAAGGTCCTCATTCTCACTGTTGAAAGTGTCCAGGTTCCCAATGCTTAGTCAGTTCAACTGAACCTGAACCTAAGTCTATTGATTGTGCTATTTGCTGTAGGGGTTCTATCTCCCTCTGTGGTGCAGTACTGTGATTGACCCACAGGGGGTGCTGTCCTGTCTCAGTCTTGGGGAGCCTGGTTGATCACCTTCTTCTTACGCACCGACACCAGGTCATAGAAGGGGTCCTTGGTGATGCTGGCTCTGATGCTCTCTATCCATGTGTCTCGTTCCTCAGCGGTAGCGGCACAGATCATGTACGACTGGTGTTTCCCCTCCACCACTCTgccgtctgtctctgtcttacaCGCCTTGATCTTCTGACCCCTGCTGTTGGGGTTATACAGCTCCAGACAGTactgaggaacagagagaaacagacaggagcaaTCAAGTCAATCACACGGAAGGATAAGTAAGGGTGAGTAGTGCATTCTTACTGGtccgctctcactctctctctttcacgcacatggtgcacacacacgcacatg
>TU1302244
CTCTGTTTGCCATTTATTAAATAATCAATTGAACAATTAAAAAacaagataaaaaataaacatgaatagaAGAACATGGTAGAGACAATAGTTCTGGATGTGTACTCCCAGGTTCTGTATGTGTACTCCCAGGTTCTGTGTGTGTACTCCCAGGTTCTGTGTGTGTACTCCCAGGTTCTGTGTGTGTACTCCCAGGTTCTGGATGTGTACTCCCAGGTTCTGTATGTGTACTCCCAGGTTCTGTATGTGTACTCCCAGGTTCTGTGTGTGTACTCCCAGGATCTGTGTGTGTACTCCCAGGTTGTGTATATGTACTCCCAGGTTGTGTATGTGTTTGGTGCTTGTGTGGCATGACGGTGACAGAAgagttgtttgtgtgtttgtgtgctatcTCTATTCACCTCTGTGATATAAATACTGTGTTGACTTCCTGGTGAGATGTGATGGTTTCTCTCTCTAACCAATACAGTCTCATCTATAGACACAGAACAGATACAATAACCAGGCGACTCAGAGATCCTCTCCACAGTATTAGCATACAGAAACAaatacatttcagtcatttaacagacactcttatccagagcaatttacaggagcATTATGGGTCAtgcgccttgctcaagggcacatcaacagttTTTCACCTAGGaggctctgggattcgaaccagcggcCTTGTGGCTACTGGCCCAATagtcttaaccactaggctacctgccgccccagtacAGTTGGCGAAGCCAGCAACGGTCGAGGTGGTATCTATTAGCATGATGTACATAGAACAGGTATGATAAACCAGACACAGAGGTCttataaatggcaccctgttccctatttagtgcaccacttttgaccagggtccataaggctctggtggaaagtagtgcactgtatagagaatagtgcaccatttgggacacagacaaagagtcataCAAGGACAGTAGGTGGAATCAGCCATGCTTGAGATCGTATCTATCTGCAGTATGTACATGAGAAACCGCTCTCTTGGCTTGGCTTCTGTCACCACCTCAACAAACAGTATGTACAGGTCACGTTGACAGCTGTTGACAATGACAGTATTTCATCTCACAGGGTAAGAAGGAAGTCCTTTGACACGGCGGTGGTTGAAAATGAGAAGTCCCTCTTCCAGACAGAACACAGTTCCACCCTTTTAATCCAGATAAAAGTCCAAATCAGTCCCCAGCAGTCTTCTCAGGAACTCTTCTTGCAACAAAACAAATTATCCCTCAATTCTCATTATGACAAAAGTTCATTTCTAATTCCTTTTTAAGGTACAAGGTCCTCATTCTCACTGTTGAAAGTGTCCAGGTTCCCAATGCTTAGTCAGTTCAACTGAACCTGAACCTAAGTCTATTGATTGTGCTATTTGCTGTAGGGGTTCTATCTCCCTCTGTGGTGCAGTACTGTGATTGACCCACAGGGGGTGCTGTCCTGTCTCAGTCTTGGGGAGCCTGGTTGATCACCTTCTTCTTACGCACCGACACCAGGTCATAGAAGGGGTCCTTGG

Function

NR:

description
uncharacterized protein LOC110504231

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1302243 False 1067 lncRNA 0.47 2 9666379 9668010
TU1302244 True 1537 TUCP 0.45 3 9667245 9669182
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118936521 LOC107087645 coding downstream 14224 9630367 ~ 9652155 (-)
LOC118938528 LOC106564434 coding downstream 86128 9575964 ~ 9580251 (-)
LOC110485557 rayl coding downstream 127123 9520385 ~ 9539256 (-)
LOC118936472 LOC106594459 coding downstream 259033 9399077 ~ 9407346 (-)
LOC110485597 LOC106590780 coding downstream 280574 9356000 ~ 9385805 (-)
LOC118938201 LOC106590876 coding upstream 3918 9671928 ~ 9695020 (-)
LOC118938202 LOC106592503 coding upstream 27440 9695450 ~ 9699472 (-)
LOC118938203 NA coding upstream 347859 10015869 ~ 10074621 (-)
lgals2b LOC106590712 coding upstream 429937 10097922 ~ 10102555 (-)
LOC110516362 LOC106590757 coding upstream 645713 10313723 ~ 10322183 (-)
G1141971 NA non-coding downstream 15232 9650500 ~ 9651147 (-)
G1141968 NA non-coding downstream 18180 9647947 ~ 9648199 (-)
G1141960 NA non-coding downstream 46064 9619893 ~ 9620315 (-)
G1141947 NA non-coding downstream 92187 9570411 ~ 9574192 (-)
G1141948 NA non-coding downstream 94659 9571217 ~ 9571720 (-)
G1141974 NA non-coding upstream 1753 9669763 ~ 9670001 (-)
G1141978 NA non-coding upstream 5921 9673931 ~ 9674196 (-)
G1141979 NA non-coding upstream 12982 9680992 ~ 9681336 (-)
G1141980 NA non-coding upstream 15572 9683582 ~ 9683823 (-)
G1141790 NA other downstream 450081 9215140 ~ 9216298 (-)
LOC110494947 NA other downstream 700671 8960307 ~ 8972481 (-)
G1141636 cbx6 other downstream 869167 8793857 ~ 8797212 (-)
LOC110515367 LOC106591437 other downstream 934596 8729223 ~ 8738426 (-)
G1142121 NA other upstream 312338 9980348 ~ 9982266 (-)
G1142620 NA other upstream 627734 10295744 ~ 10299367 (-)
G1142757 NA other upstream 896450 10564460 ~ 10566465 (-)
LOC110494931 cacna1a other upstream 1152414 10780341 ~ 10913542 (-)

Expression

G1141973(cyh2) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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G1141973(cyh2) Expression in each Bioproject

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G1141973(cyh2) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network