G1142646


Basic Information

Item Value
gene id G1142646
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10279494 ~ 10280272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1303091
cagatacagTCAGTTTACCAACCTACATTAACCCATCTCATTTAATCTAAGGTGTCGCCCACCTTCTCCATAAGCCTTCTCCATAAGCCTGCCTTCCGTCCTGTACctgtctgactctgacctgatcacaaacctctgcctaccctgaccccgagcctgccttccgtcctgtacctgtctgactctgacctgatcacAAACCTCTGCCTACCCGGACCCCGAGccagcctgccgtcctgtacctgtctgactctgacctgattacAAACCTCTGCCTACCCGGACCCCGAGccagcctgccgtcctgtacctgcctgactctgacctgattacaaacctctgcctaccctgaccccgagccagcctgccgtcctgtacctgtctgactctgacctgattacaaacctctgc
>TU1303092
cagatacagTCAGTTTACCAACCTACATTAACCCATCTCATTTAATCTAAGGTGTCGCCCACCTTCTCCATAAGCCTTCTCCATAAGCCTGCCTTCCGTCCTGTACctgtctgactctgacctgatcacaaacctctgcctaccctgaccccgagcctgccttccgtcctgtacctgtctgactctgacctgatcacAAACCTCTGCCTACCCGGACCCCGAGccagcctgccgtcctgtacctgtctgactctgacctgattacAAACCTCTGCCTACCCGGACCCCGAGccagcctgccgtcctgtacctgtctgactctgacctgattacaaacctctgc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1303091 False 411 lncRNA 0.56 2 10279494 10280272
TU1303092 True 343 lncRNA 0.55 3 10279494 10280272

Neighbor

gene id symbol gene type direction distance location
lgals2b LOC106590712 coding downstream 176939 10097922 ~ 10102555 (-)
LOC118938203 NA coding downstream 204873 10015869 ~ 10074621 (-)
LOC118938202 LOC106592503 coding downstream 580022 9695450 ~ 9699472 (-)
LOC118938201 LOC106590876 coding downstream 584474 9671928 ~ 9695020 (-)
LOC118936521 LOC107087645 coding downstream 627339 9630367 ~ 9652155 (-)
LOC110516362 LOC106590757 coding upstream 33451 10313723 ~ 10322183 (-)
LOC110487259 LOC106593718 coding upstream 353877 10634149 ~ 10657332 (-)
LOC110485344 trmt1 coding upstream 416754 10697026 ~ 10717367 (-)
LOC110487189 LOC106590640 coding upstream 460533 10740805 ~ 10762367 (-)
LOC110494931 cacna1a coding upstream 500069 10780341 ~ 10913542 (-)
G1142642 NA non-coding downstream 9049 10270086 ~ 10270445 (-)
G1142633 NA non-coding downstream 27256 10250727 ~ 10252238 (-)
G1142569 NA non-coding downstream 131364 10147721 ~ 10148130 (-)
G1142553 LOC106590723 non-coding downstream 172607 10106416 ~ 10106887 (-)
G1142546 NA non-coding downstream 205266 10072630 ~ 10074228 (-)
G1142620 NA non-coding upstream 16481 10295744 ~ 10299367 (-)
G1142670 NA non-coding upstream 74209 10354481 ~ 10354867 (-)
G1142724 NA non-coding upstream 194334 10474606 ~ 10475236 (-)
G1142727 NA non-coding upstream 198065 10478337 ~ 10479324 (-)
G1142728 NA non-coding upstream 199639 10479911 ~ 10485032 (-)
G1142121 NA other downstream 297228 9980348 ~ 9982266 (-)
G1141973 cyh2 other downstream 610312 9666379 ~ 9669182 (-)
LOC110485597 LOC106590780 other downstream 898445 9356000 ~ 9385805 (-)
G1141790 NA other downstream 1063196 9215140 ~ 9216298 (-)
G1142757 NA other upstream 284188 10564460 ~ 10566465 (-)
G1143380 NA other upstream 877614 11157886 ~ 11159261 (-)
G1143449 NA other upstream 1000790 11281062 ~ 11282092 (-)

Expression


Co-expression Network