G1142728


Basic Information

Item Value
gene id G1142728
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10479911 ~ 10485032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1303181
tatctctcgacctgaacgtgaggccttggagacctacatcaaggagtctgattacccgcacctgtatcccatcagctatctgcacacctggtcctgatcatcatctctcctcttcataagcccggacctgacatccattccctgccggatcgttagccatgaacattactcacccggatcatttaccccattcccgcctggtcgtcagaagattccgcttccccattggatccacctatttactcccatcaactcatcaccgctacccgctacaccacctggatatatctacccattcacttgtaaataaatactcacc
>TU1303182
cctggaacgcaccctgtctggttgccgggcaatgtagccagttggggtttctgattacccgcacctgtatcccatcagctatctgcacacctggtcctgatcatcatctctcctcttcataagcccggacctgacatccattccctgccggatcgttagccatgaacattactcacccggatcatttaccccattcccgcctggtcgtcagaagattccgcttccccattggatccacctatttactcccatcaactcatcaccgctacccgctacaccacctggatatatctacccattcacttgtaaataaatactcacc
>TU1303184
cctggaacgcaccctgtctggttgccgggcaatgtagccagttggggtttctgattacccgcacctgtatcccatcagctatcatcatctctcctcttcataagcccggacctgacatccattccctgccggatcgttagccatgaacattactcacccggatcatttaccccattcccgcctggtcgtcagaagattccgcttccccattggatccacctatttactcccatcaactcatcaccgctacccgctacaccacctggatatatctacccattcacttgtaaataaatactcacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1303181 False 319 lncRNA 0.50 2 10479911 10483010
TU1303182 False 322 lncRNA 0.52 2 10479911 10485032
TU1303184 True 303 lncRNA 0.51 2 10479911 10485032

Neighbor

gene id symbol gene type direction distance location
LOC110516362 LOC106590757 coding downstream 157728 10313723 ~ 10322183 (-)
lgals2b LOC106590712 coding downstream 377356 10097922 ~ 10102555 (-)
LOC118938203 NA coding downstream 405290 10015869 ~ 10074621 (-)
LOC118938202 LOC106592503 coding downstream 780439 9695450 ~ 9699472 (-)
LOC118938201 LOC106590876 coding downstream 784891 9671928 ~ 9695020 (-)
LOC110487259 LOC106593718 coding upstream 149117 10634149 ~ 10657332 (-)
LOC110485344 trmt1 coding upstream 211994 10697026 ~ 10717367 (-)
LOC110487189 LOC106590640 coding upstream 255773 10740805 ~ 10762367 (-)
LOC110494931 cacna1a coding upstream 295309 10780341 ~ 10913542 (-)
LOC118938429 NA coding upstream 496650 10981682 ~ 11101213 (-)
G1142727 NA non-coding downstream 587 10478337 ~ 10479324 (-)
G1142724 NA non-coding downstream 4675 10474606 ~ 10475236 (-)
G1142670 NA non-coding downstream 125044 10354481 ~ 10354867 (-)
G1142620 NA non-coding downstream 180544 10295744 ~ 10299367 (-)
G1142646 NA non-coding downstream 199639 10279494 ~ 10280272 (-)
G1142776 NA non-coding upstream 132170 10617202 ~ 10617475 (-)
G1142783 NA non-coding upstream 161747 10646779 ~ 10647803 (-)
G1142506 NA non-coding upstream 185738 10670770 ~ 10671856 (-)
G1142798 LOC106593677 non-coding upstream 186956 10671988 ~ 10672980 (-)
G1142121 NA other downstream 497645 9980348 ~ 9982266 (-)
G1141973 cyh2 other downstream 810729 9666379 ~ 9669182 (-)
LOC110485597 LOC106590780 other downstream 1098862 9356000 ~ 9385805 (-)
G1142757 NA other upstream 79428 10564460 ~ 10566465 (-)
G1143380 NA other upstream 672854 11157886 ~ 11159261 (-)
G1143449 NA other upstream 796030 11281062 ~ 11282092 (-)
LOC110485554 LOC106590435 other upstream 942658 11425756 ~ 11429422 (-)

Expression


Co-expression Network