G1142798 (LOC106593677)


Basic Information

Item Value
gene id G1142798
gene name LOC106593677
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10671988 ~ 10672980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1303261
GCAACGTCCCCACGTCGCGGTGCGGCAAGATGTGGAGCTCGCAGAAAGACGCCAAGCACACCAGACACGACTTGAGCGCTTTCAGTTTGTTCTGAACCGGGCAGAAGTCGCACGGAACGTCCCCTACACCGCCTAGATACAACTCCGGCGCCGTAGCCAGTTCGTTCAGTTTGAGTTTGTCCACTACCTCTTGTAGCACCGTGTTCCGCCGTAGCATCGGTCGAGGTATGAACTCTTCCCGACATTGCGGACAACTGTAGTGACCAAGGTCGGTTTGGTCCCAATAACAGGTCATGCATGCCATGCAGTAGGTGTGTCCGCACGGAATGGACACCGGATCCTTCAAGATATCCAGGCAAATAGGGCACCTAAACTGGCTCTCTGTTACCGAGATATTCGCCTCAGCCATATCAGTAAGGAGTTTTCGTATGTTCTCCCTCTCGAGCCTCTGTAGACTATTTCTCCGTAAAAGAAAAGAAACCAAAAAAGGCACTCCCTGATTCCCGGTTGTTTGTGTATGTGACGGGGAGCGGTTGCGGCTCAGGTCTTACAGGAATAGCCTAGGCTTCCGATATGTCATCCATTCCGTACGGGAGCTAATTACGAGAGTAGACTACATCAGAAAGCGTTTTCGGGATCCATGTAAATACAAACCCTGAGGTCAACCCGTCTCCCTTTACCGTATGACTTCAACTACCTAATTCACCATAATAAACGGACAATATACAATAATAATAAAGGCGCATACAGATTATTGTTTTCGGGATCCATGTAAATACAAACCCTGAGGTCAACCCGTCTCCCTTTACCGTATGACTTCAACTACCTAATTCACCATAATAAACGgacaatatataataataa
>TU1303263
GCAACGTCCCCACGTCGCGGTGCGGCAAGATGTGGAGCTCGCAGAAAGACGCCAAGCACACCAGACACGACTTGAGCGCTTTCAGTTTGTTCTGAACCGGGCAGAAGTCGCACGGAACGTCCCCTACACCGCCTAGATACAACTCCGGCGCCGTAGCCAGTTCGTTCAGTTTGAGTTTGTCCACTACCTCTTGTAGCACCGTGTTCCGCCGTAGCATCGGTCGAGGTATGAACTCTTCCCGACATTGCGGACAACTGTAGTGACCAAGGTCGGTTTGGTCCCAATAACAGGTCATGCATGCCATGCAGTAGGTGTGTCCGCACGGAATGGACACCGGATCCTTCAAGATATCCAGGCAAATAGGGCACCTAAACTGGCTCTCTGTTACCGAGATATTCGCCTCAGCCATATCAGTAAGGAGTTTTCGTATGTTCTCCCTCTCGAGCCTCTGTAGACTATTTCTCCGTAAAAGAAAAGAAACCAAAAAAGGCACTCCCTGATTCCCGGTTGTTTGTGTATGTGACGGGGAGCGGTTGCGGCTCAGGTCTTACAGGAATAGCCTAGGCTTCCGATATGTCATCCATTCCGTACGGGAGCTAATTACGAGAGTAGACTACATCAGAAAGCGTTTTCGGGATCCATGTAAATACAAACCCTGAGGTCAACCCGTCTCCCTTTACCGTATGACTTCAACTACCTAATTCACCATAATAAACGgacaatatataataataa

Function

NR:

description
tripartite motif-containing protein 47-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1303261 False 864 lncRNA 0.48 2 10671988 10672980
TU1303263 True 735 lncRNA 0.50 2 10671988 10672980

Neighbor

gene id symbol gene type direction distance location
LOC110487259 LOC106593718 coding downstream 14656 10634149 ~ 10657332 (-)
LOC110516362 LOC106590757 coding downstream 349805 10313723 ~ 10322183 (-)
lgals2b LOC106590712 coding downstream 569433 10097922 ~ 10102555 (-)
LOC118938203 NA coding downstream 597367 10015869 ~ 10074621 (-)
LOC118938202 LOC106592503 coding downstream 972516 9695450 ~ 9699472 (-)
LOC110485344 trmt1 coding upstream 24046 10697026 ~ 10717367 (-)
LOC110487189 LOC106590640 coding upstream 67825 10740805 ~ 10762367 (-)
LOC110494931 cacna1a coding upstream 107361 10780341 ~ 10913542 (-)
LOC118938429 NA coding upstream 308702 10981682 ~ 11101213 (-)
LOC118938431 LOC106564445 coding upstream 434566 11107546 ~ 11110630 (-)
G1142506 NA non-coding downstream 132 10670770 ~ 10671856 (-)
G1142783 NA non-coding downstream 24185 10646779 ~ 10647803 (-)
G1142776 NA non-coding downstream 54513 10617202 ~ 10617475 (-)
G1142728 NA non-coding downstream 186956 10479911 ~ 10485032 (-)
G1142797 NA non-coding upstream 321 10673301 ~ 10675541 (-)
G1142800 LOC106593677 non-coding upstream 7416 10680396 ~ 10682161 (-)
G1142801 NA non-coding upstream 15182 10688162 ~ 10689190 (-)
G1142804 NA non-coding upstream 42862 10715842 ~ 10716761 (-)
G1142513 NA non-coding upstream 59126 10732106 ~ 10732517 (-)
G1142757 NA other downstream 105523 10564460 ~ 10566465 (-)
G1142620 NA other downstream 372621 10295744 ~ 10299367 (-)
G1142121 NA other downstream 689722 9980348 ~ 9982266 (-)
G1141973 cyh2 other downstream 1002806 9666379 ~ 9669182 (-)
G1143380 NA other upstream 484906 11157886 ~ 11159261 (-)
G1143449 NA other upstream 608082 11281062 ~ 11282092 (-)
LOC110485554 LOC106590435 other upstream 754710 11425756 ~ 11429422 (-)
LOC118938427 LOC106564452 other upstream 782594 11447021 ~ 11494371 (-)

Expression


Co-expression Network