G1142502


Basic Information

Item Value
gene id G1142502
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10733912 ~ 10738270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1302912
aggtagtccCTCCACGCTTGTCAGTTTTCcaccgtttggtgcctaatgaacacaaccctggatCCATCGAAATAGAACGGACTTGGAACCTCTAAccacctcaaactcaactctggacctcgaagccagtttcCACTGAatgttttcattgttcccctctaaaaccagggactgatttagacctgggacaccaggtgtgtgcaattaatcattaggtagaacagaaaaccagcaggctcggGACcgcgtagggtaagagttgagtacgGCTGCCTaacccattatgccatcattgacttgaatggggaggtCCGTTCTatagattctatttctatgcccgGATCACACTTCTGCCACCAAATACCACTCCACAGACCGTTCTAGAGGGACTAAATAGAGAGCGTGTTGACAAGGTGCCGAGGCTTTGGCTAGCGGTCTCTACTATACCGGACCGTTAGCGCTCACCCAAAGGTGCTTCAGTAAAGATTATTTCACCCTCTCTATTTCCCTTTTATTTGTCTGCGGTGCCGAGTGGAACCAGGTAGCGACAAGAAGCAACCCAGTGAGCACCAGACATTGAAATGGCGTATTGTCAACGTCTTGGGAAGACAGACGGGTAGATACATGGACATGACAAAGACAAGAAGCAATGTATTCCTGTCAGGATATAGGCTATGAATGAGTCGTAACTTGGGGCTGTGTACAGGCTCCAGCAGAGCTTACGTTAGCTATGGGGATCAACGGACTAAATATTTGGTCTCAAACACAATGGGGACTTCATCCCCAAAGCAAATACTGACAGGTCTTTTTGAATGTAGAATGAATGAATACAAGACAAGTCGAGACAGAAAGCAAAGCTCAACCACTGTCTCACTGATGTAACATTACGCTGCCCTCTATCGGTAGGATGATGGTAATGTCAGGCAGCGCAAGaagtcccccctccccccctgagTTGGAGTACCAACACCAGACACCAGGTGGGCGAGCACCTTATGAGCATCACAATCCAGCTATTCTCTTGTGGACAGACAGTTTTAGGCAATAATGTTACTTCTGGGTAACCGAGATCACAATCCAGCCAACATTTCCCTGGCTGGGACAGTTGTCATTCtataccatttagcagatgcttttatccaaagcgatttacagtcatgcgtgcatacattttacgtatgggtggtcccgggaattgaacccactatcctggcgttgcaagcgccatgctctaacAACTGAGCTGGATCACATGAGACGAGAGCCAAGCATGGTCAAGTGAAGGCGGAAGCTAATTTAACTTCCAGGGAATTCTGGATTTCAAAGAAATGTACAAGAACATAAAAAACAATGTCTGATGGATATTATAAATGGTTATTCCTAGTAAGGAATTTAAGAGATATAGTCCCTTAGGAGAGACTGACATACCAGCTAGTGGGGCTTCTACAGTCCATCATCCGTCGGTCTGTAAACCAACCAACCCTGTCTCCCTCCCAAAAGTACACAATGCAGTTTCAGTACTGTGTTCCCCCTTTTCGTGTCCAGCATCAAAACTGCCCCCTCCCCTTCATTACAGCACAATGCAAAAATATGTGGATCTCTTTCTCTAGCTATTTTACACTTTCAGAGTTCGACTTCCTCTTAATGACAGAACACTTGGCAAGTTTCTAAAACGTGTTAATGTTTGAATTAGTAATCAGGACCTAAAAAACACTACATAGTACATAGCTTCTCTTAGCAACACTAGTATTTACACACTAGCGTTGCTAGGAATTAGCTTGCAAAAAAACAGAATAGTCAGCTGGAAGACAGGAGTGAAATAAAATGACATTTCAACTTACTCTGCCGATTGTCTGTAGAGTTGGTCCTTATGCAGGGGGGAAATTAAGCAAGTAACATTTAGTAGAACAGAACTTAAACCCTGTCCAAACGTGGGTCTGTCGTCCCACTTCCTCTCTGCTTTGCTCGCGTCAAGATAAAAGTCTGGCACGTGCGCCATACCTGCACAAAAGAGCTTGcgagggacttttattttgacatgAGGTAAACAGAGAGGAACTGAAGTCCCGGAGGAACTGCATGGGGTCTACAAACAGACCGTTAATTATACGTCCCATTCTATGTTCTTTCTCCATTTCCCCCCTGAATAAAGACCAACCCGACGGACAAAGTTGAAATTGAATTTGACTTCTGGCTTCCAAGCTAATTCCTAGCAAGGATATTGTGTGAATACTAGCGTAGGTAAAAGCAGCTATACAGTACACATTTAAATCTGTAGAAATAAAAACATTGGTAAGTATCAACAGAAAAACAGCAACGTAATAACAACATTTCCTACAAAGCTCTTTTCTAAAATATGGTCTCtagtattttttaaatgtcatttCTGGCCCCGCGAAACAACTTCCAGCCACATTTAGAAATGGTGTGCTTGGCCAGTGTTCCTACAGGATCCCTCACTCACTCGTCCTCCTTTTCCTcgttctcctgtcccctctctcagTAGCATTGGACTTGATaaaagtcatttaaaaaaaaagacaaacatggttgtatcccaaatggcatcctattccttatttagtgcactacttttgaccagggtccatagggctctggtcaaaagtagtgcaatatttttttagggaatagggtgccatttggaacgtagaCTTGATTTCCAGGCTAGGAGGCCAGGGGTGTCTGTGGTaacgtcccaaaatggcaccctattcccaatatagtgcactacttttggtcagAGTCCTATGGGATGCcatatgggccctagtcaaaagtagtacagGTAATAGGGGATTGATTTCAGCTCTGCTATAATGAAACAGTCTGGATTTCCAGGCTGTCTGCCTGACGACTCACTACATACTTCAGTCAGGCAGCCAGCGTTGAAGTCGGTTGTGGTGACATCACAATGAGGGGTGTTGTGCAAAACAAAAGTCATTACCGATTGGAGCATCTCGAACCAATCAGAGTAAGCCAATGACACATTTTGAAAACGCAgctttacccacgtgtgttctggctctggcccaacccatcgctTTCTGGGACCAATCACAACTGTTTGAATGTGTTTGCGTTCTAGAAATCGTCAGATCCATGTTGTAGCGTTTGGCCGGAGCAAGGAGCCTGGGTAGGCAGGAAAAGGCTACGTCACCCCACCCCTTACATTAAGAAACAACTAAATATTTATCTTTGTTGCAAAAAGGCCATGGGACGAGCATCTTCTCCCTCTCAGCTGTCTTGACTGCAGTTAAGTACCAGAGGCCTGCCACAATGCTTCCTACGTCCTCAGACTCTAAACAAGCAGGAAGAAAGAGTAGCAccacacccccctcccctccatccataAGAGTTAGGGTAACAACCATGTATCTAGGAACGTATAGAATAgcgcccccccccctccatccgtAAGAGTTAGGGTAACAACCATGTATCTAGGAACGTATAGAATAgcaccactgtctctctcccttcctcccaactccctcccatcttcCCGCTCAAGTCTAGGGATTTCACATAAAAATAAAGTCAGTCAACTTGGAATAACAACAATCTTATTAGTATAAACATCTAAAATGGACTGTGTCTCACTGTATTAATATTTAGATAGAGAGACCACCGACAGGGAAATGTATACCACCATCTTCAACATCATCCTAGTCATCACTGCACTTTTATAAAACAGACCCATTGTCAGCCTGCAGTCTCCTGAAGGGAATGGACGCCTGGTTGGTTGGTTAGACACATGCATTGCCCGATGCAgagacatatatacagtaccagtcaaaagtttggacacacctactcattcaagagtttccttcaagattgttggaaaaagcattccaggtgaagctggttgagcgaatgccaagagtgtgcctaactgtcatcaaggcaaagggtggctatttgaagaatctcaaatatatatttgatttgtttaacactttttttggttactacatgattccatatgtgttatttcatagttctgatgtcttcactattattctacaaataaggaaaagccctggaatgagggctttttgactggtactgtatatacacacacacgcacacagactgtCACACCAGCACACAGGCAAAAAAGGACACACCTGGACCGACACACACACCAAGTCATCCTATCAGGCAGTCCCATCTGTGGTTTAGACAGTTACCACACCAAACAGCCCCCTTCCTCCTGCCAAACAAACATTCACTCTTACACACCAGTCATTCACATACACAACACGGCCGCCATTTTCAGACATTTAGCTTGCATcctaaacggcaccctattccctacattggcTCTGTCCCAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1302912 True 4359 lncRNA 0.44 1 10733912 10738270

Neighbor

gene id symbol gene type direction distance location
LOC110485344 trmt1 coding downstream 16545 10697026 ~ 10717367 (-)
LOC110487259 LOC106593718 coding downstream 76580 10634149 ~ 10657332 (-)
LOC110516362 LOC106590757 coding downstream 411729 10313723 ~ 10322183 (-)
lgals2b LOC106590712 coding downstream 631357 10097922 ~ 10102555 (-)
LOC118938203 NA coding downstream 659291 10015869 ~ 10074621 (-)
LOC110487189 LOC106590640 coding upstream 2535 10740805 ~ 10762367 (-)
LOC110494931 cacna1a coding upstream 42071 10780341 ~ 10913542 (-)
LOC118938429 NA coding upstream 243412 10981682 ~ 11101213 (-)
LOC118938431 LOC106564445 coding upstream 369276 11107546 ~ 11110630 (-)
LOC110485570 LOC106590535 coding upstream 376865 11115135 ~ 11116092 (-)
G1142510 NA non-coding downstream 358 10733105 ~ 10733554 (-)
G1142513 NA non-coding downstream 1395 10732106 ~ 10732517 (-)
G1142804 NA non-coding downstream 17151 10715842 ~ 10716761 (-)
G1142801 NA non-coding downstream 44722 10688162 ~ 10689190 (-)
G1142800 LOC106593677 non-coding downstream 51751 10680396 ~ 10682161 (-)
G1142500 NA non-coding upstream 1232 10739502 ~ 10740062 (-)
G1142515 NA non-coding upstream 75753 10814023 ~ 10843369 (-)
G1142535 NA non-coding upstream 87340 10825610 ~ 10829252 (-)
G1142838 NA non-coding upstream 139728 10877998 ~ 10878203 (-)
G1142757 NA other downstream 167447 10564460 ~ 10566465 (-)
G1142620 NA other downstream 434545 10295744 ~ 10299367 (-)
G1142121 NA other downstream 751646 9980348 ~ 9982266 (-)
G1141973 cyh2 other downstream 1064730 9666379 ~ 9669182 (-)
G1143380 NA other upstream 419616 11157886 ~ 11159261 (-)
G1143449 NA other upstream 542792 11281062 ~ 11282092 (-)
LOC110485554 LOC106590435 other upstream 689420 11425756 ~ 11429422 (-)
LOC118938427 LOC106564452 other upstream 717304 11447021 ~ 11494371 (-)

Expression


Co-expression Network