Gene
RNA
| Item | Value |
|---|---|
| gene id | G1142838 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 10877998 ~ 10878203 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1303303 | True | 206 | lncRNA | 0.30 | 1 | 10877998 | 10878203 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110487189 | LOC106590640 | coding | downstream | 115631 | 10740805 ~ 10762367 (-) |
| LOC110485344 | trmt1 | coding | downstream | 160631 | 10697026 ~ 10717367 (-) |
| LOC110487259 | LOC106593718 | coding | downstream | 220666 | 10634149 ~ 10657332 (-) |
| LOC110516362 | LOC106590757 | coding | downstream | 555815 | 10313723 ~ 10322183 (-) |
| lgals2b | LOC106590712 | coding | downstream | 775443 | 10097922 ~ 10102555 (-) |
| LOC118938429 | NA | coding | upstream | 103479 | 10981682 ~ 11101213 (-) |
| LOC118938431 | LOC106564445 | coding | upstream | 229343 | 11107546 ~ 11110630 (-) |
| LOC110485570 | LOC106590535 | coding | upstream | 236932 | 11115135 ~ 11116092 (-) |
| LOC118938432 | NA | coding | upstream | 354282 | 11218089 ~ 11233755 (-) |
| LOC110485558 | LOC106590506 | coding | upstream | 445440 | 11323643 ~ 11359141 (-) |
| G1142515 | NA | non-coding | downstream | 34629 | 10814023 ~ 10843369 (-) |
| G1142535 | NA | non-coding | downstream | 48746 | 10825610 ~ 10829252 (-) |
| G1142500 | NA | non-coding | downstream | 137936 | 10739502 ~ 10740062 (-) |
| G1142502 | NA | non-coding | downstream | 139728 | 10733912 ~ 10738270 (-) |
| G1142839 | NA | non-coding | upstream | 641 | 10878844 ~ 10879108 (-) |
| G1142849 | NA | non-coding | upstream | 20484 | 10898687 ~ 10899346 (-) |
| G1142867 | NA | non-coding | upstream | 51165 | 10929368 ~ 10930669 (-) |
| G1142874 | NA | non-coding | upstream | 59587 | 10937790 ~ 10938758 (-) |
| G1142880 | NA | non-coding | upstream | 66314 | 10944517 ~ 10945048 (-) |
| LOC110494931 | cacna1a | other | downstream | 55631 | 10780341 ~ 10913542 (-) |
| G1142757 | NA | other | downstream | 311533 | 10564460 ~ 10566465 (-) |
| G1142620 | NA | other | downstream | 578631 | 10295744 ~ 10299367 (-) |
| G1142121 | NA | other | downstream | 895732 | 9980348 ~ 9982266 (-) |
| G1143380 | NA | other | upstream | 279683 | 11157886 ~ 11159261 (-) |
| G1143449 | NA | other | upstream | 402859 | 11281062 ~ 11282092 (-) |
| LOC110485554 | LOC106590435 | other | upstream | 549487 | 11425756 ~ 11429422 (-) |
| LOC118938427 | LOC106564452 | other | upstream | 577371 | 11447021 ~ 11494371 (-) |
| LOC110485539 | cxcl12b | other | upstream | 922267 | 11797902 ~ 11811263 (-) |
