XLOC_030525


Basic Information

Item Value
gene id XLOC_030525
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 59115869 ~ 59202263 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059600
ccaaataaacaaatatgtaattTATGTTTTCTACAGCTAGATTAACACCATCTCCATTACCAGGATAACTATTTTCactattctctctctctttctctctctctctctctctctctcgttctcttgCATGGATGATCACATTTGGGGGCCCGTGGCATCTACAAGATTGAAAGCACGTGGTATACAGTATGTTATGTGTGGCACGTTGTAAATGCTGCGGCGTGGCGCCTCCTGGCGGTGGAATGCGGAACCGGAGGAATCCGTAACCGTACAGCAGAGCAGAGTCTCTCCGTGCATTGTCTTCACAAACAGTCCGCGGTGCGCCTTCACGCCGAGCAGAGCTCCCCCAGCGCCGCTCCCCTGCTCACCTCCAGCCGGCGCGCAGCGACAGCAAAATGGAAGTTAAATGGCTGACAAACGGAGTTGTTTAGTGCGCCTCACGGGGACAAGAATGTCCCAGAAAAGCGACGCGAACTCTTACCCAGATGGGTACAGGGTCCTCAATAGCTGCGAACTACGGGAGCTCCTACAAGATGAAGACAAAATGAATCAGATCGTGCGACTCAGTGAAAAGTTCCAGGAGCTCCAGATGGACAGGGATACCTTGTTAGTAACCAATCGGAGTCTTGCAGAAGATAGCCTTACCCGTCGGCCTCACCTTCAAAATGGCAAGCTGCAGTTGGCTGCAAAGTATGAAGAACTGGCAACGCTGAGCACCGCCTGCAGGGAAAAGCAAAGCCGACTTGAGGCCTTCACGGAGAAGCACAGCCCCCAGACTGCCCACAATCTGCTGCAGGAGGAGGTCACGCGTGCCGAAGAACAGTCTGAGGAGCTGCTGGAGAGATTCATGGAGGGCCACGTGCCCCTGGAGGAGTTCCTGGATTGTTTTCAAAGCCACAGGAAGACATACCACATCCGCCGCGCTCAAGCCGAGAAGCTCCAGGAGCTCAACAGACCCGGCAGGAAAGCCAAGAAACAAGAGGAGGAGCAGCACAAGAGGGAGGACCAGCTCAAGGAGTCCCATTCTAACGGCATCAGCGGCCCGCCTCGGGTCTTCCAACTTCGCTACGGCCTGACCCCGGCCATCCTGCTGCCTCTGTCATCTTCCTCCGCCTCAATACTGGACTCTCGCTCGGGCCAGCCACAGGGGTCAGGCCCCAGCGCCCCACACTCCTGCCCAGGGCAGCCTGTCGGCCTCAGAGTAATAGGACAGTTACCTGGCTGGCCTGTCAGGCCGGTGCGCCTGCAGCAACTGTACAGGCCCAGTCCCCATCAGCCTGAACCACCGTGTCGATAACGCTCAGCGCGAAAAACCCAAGACCGCACGAAGCCTTCATCGAGTCcataaataataatgatgctGCCATGAAATCAAATATCCAtgttagggatgcacgatattaTTGCCACATTCGAGGAATCAACTAATAATTGATTGAGATTTACTCATCGGCTTTAACTCGATATCAAAAATGATGCTGATCTGCCTTCTTCATAAAATGATGAGTCAGCAATACATTTTCTGGCAGGAGTGCTAGCTAAAAGATTAAGTCAACAATCTGctgattatttgattaaatagtTGATTGACAATATAAATTAACTAGGCACATTTCCATTACGAATTTGGGCAGAAGTCTGGCAGTATTTTCTAAATGTCAACATTTCCATTAGTTCAGTGGTCCCTGACCTTTTTTTCACTGCGAACTGCTTGCGGCTAGGCATGTGACGATAACCGTGtccaaggtatactgcggtttggaaaagtcaaggttttaagaCCGTCCaagttttctgctataccgttcctaaggtatgagtaatgtttttttatttaattttaatttttttttttttttcttttttagggcaacagtatctccagcagaaaagatctccagagttgcagttttaaattgtaaaaaaaatcggtgtttttgaaactaatgaagacagcataagtaaataattcatttgaattatttagcctgacatgtttactgctccgaaatatttgaaatgtttctcaaattcaaatatattgtgtacaaaggcaaggcaaggcaagctttttttatatagcacatttcatacacagtggcaattcaaagtgctttacataaacaagaataaaagtaaaataaaaataaaaaataaagtaaaataaaaataaagtaaaataaaaacaaataataaaaattagttaaaaaacataaaaatgggtaaaatgtaatataaaagaatgaagaagaagagaaaaacataatagtgcaatctgtcggacgcagcacagtgctcattcagtaaaggcacagctaaacagttgtgttttcagtcttgatttgaatgtgcctaatgttggagcacatctgatcatttctggaagctgaagaaaggggaaaaaggttttgttttttacccatacatttaaaaagaaaatattttagagcagtaatctcaatatcgtgatactgtgaaaccgtaATATTtatatctaaggttatcataccgtcagaatcttataccggctcaTGCCTACTTACGGCATTTATTCAACTTGGTGTGTCTATCTGGCACGCATGTCGATTGAAAATAACTAACTTCCCGTGCTCTAGAAAAGACAGGATAGGCTAACGGATCCTTTTTTTAGAGACTTCCATCATTTGAGATCTCCAAAAGTTGATCtacttgcacagacatggtgtaTTCACCTGAttgatccattccttggcagttcacaGGTCCTTCGATGGGCCTTTTcccctgaggaaagaaactttccaaagacgtctctttcttacttattttgctgcTTTAGAGCTAAATTTGGGCGCTCAAATGGCCGAGATGTAACCGAGAGAATACAgtcgtttttcaaaataaaagttttttcaaaataaaagatcgttcagattcagataataaataaaacggaaataatgaATGATTTCATGTGCAGCCCGGTACCAACTGATCCATGGACCGGTACCGGCCCGGTGGTTGAGACCACTGCATTAGCTgactaaaacataataaaatcaaaaattatagtaaaatataaagGTTTACTTACTAGTCAATGCactagtcattttatttttaatagaaggAGATCTGTCAGCCATCAGTGCGTTATTTCAGGGTTCCTACAAGTCTTGGAATTGctggaatatcatggaattttaTTTTAGACAGCAAATTTCAgggaattttatatatttttttgtccaaGTCATTGAATGTCATGgatttttatttgttgatttcaATTTTACTTGCCATTAATCAGAATGAAACTTtaaataccattttttttttgcatttgtttaagtttttTCTATTGTTAtggttaatttattttctttctgtgcCTTTTATTATTTTCCCGCTTGTCGACGTTCAgtcaaatatattaaaacaatataataagaaaatgacAGTTTACAACATTAAGCAGCACACGTTTTCCTTTGTTTTGCTATatataaatggaagtgaatgaaactGGAAGTCTTGACACATTTAGATGAGTGACAAAAATCAGGGAGTTTGACATTTGGCTTAAAGTGGGAAACCCGCCTTCATGTCTGCCTCCAGGtctttgtaaatcatgacattacTCTGTTGCTTgaccttaataataatataaatgtatatataaaggtTTATACCTTTAGTTTTACTGGACAATAGTGTCTacacaggaaagcatggggaagAAAGAAGGGAAAAGGATTGGTTCCCGAACCCAGAATTGAACTCTGGTCAGCATGAGCACATTAGTGCTATGCTATAATAGTTTTGTAGTTGGTGTGCTCCATCTTTAAAGAGTGACCATATTATATACGCCATGTGACCTGTTTCCATTGCAGTTTTGTAAAATATtccttttcccttttttaaaacaGCTCTAAAACCACCTCATGCAAGCATAAAAACGCGAGCAAtgcaaactttttttctttttttgatgatGTGTTTGGTCATTTTTGTTTAATGATGCACATTTCCATATAGGCATATTTTCAATTCACTATTTTGATTTGCACAGTTTTAAGGGTAATGGAAAGGCGCCTAGTAATTCAGGTTGCAAAGTTATTATTGCGATATTGTATCAGTAAAATGAACAGCAGACAATTGTAGACTAACAAATAGAATATCTgtgaaaattcatttaaaaaatgttggcttATTGGATCTCAGCAGAAATCAAAATATCGTGCATCTCTGATTCATGTGTCCAAAAAGGGAGGAGAGCGGAAAGCCATAAAGTATTTGTTGATGTCGCTTGTCGTTGTTGCTCGTACGTTTCTCTTCATTTGGTTTGTGTAGTTTGTGTGGGTTTGTTCAGTCGagctgctgtttgtttgtttgtttgtttgtatgagGGAAGTGGCCTGTTTCAAGAGACGCTGCTTTTTAGACTGGAAGGTGTTTTTTGGGGGGGTCAGTGATGGACTTGTGATATGGCACCTCTTTTGTAATGTTTATGGGTGTTCAATAAAGTCTAATCATGATGTTTATTTTAAGCCT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0001885 endothelial cell development biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059600 True 4533 lncRNA 0.41 4 59115869 59202263
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Neighbor

gene id symbol gene type direction distance location
XLOC_030524 rabep1 coding upstream 32571 59030096 ~ 59083298 (+)
XLOC_030523 derl2 coding upstream 103270 58996765 ~ 59012599 (+)
XLOC_030522 ccdc84 coding upstream 419605 58687541 ~ 58696264 (+)
XLOC_030521 foxr1 coding upstream 431414 58679071 ~ 58684455 (+)
XLOC_030520 zgc:194948 coding upstream 438876 58665648 ~ 58676993 (+)
XLOC_030526 prkrip1 coding downstream 32158 59234421 ~ 59248274 (+)
XLOC_030527 upk3b coding downstream 50438 59252701 ~ 59264707 (+)
XLOC_030528 rasa4 coding downstream 75930 59278193 ~ 59391081 (+)
XLOC_030529 clip2 coding downstream 189920 59392183 ~ 59480161 (+)
XLOC_030530 NA coding downstream 287057 59489320 ~ 59489621 (+)
XLOC_030514 NA non-coding upstream 694369 58416064 ~ 58421500 (+)
XLOC_030511 FQ378020.1 non-coding upstream 903585 58212161 ~ 58212284 (+)
XLOC_030510 BX950179.1 non-coding upstream 1077983 58037772 ~ 58037886 (+)
XLOC_030502 NA non-coding upstream 1630255 57480014 ~ 57485614 (+)
XLOC_030498 NA non-coding upstream 1874316 57238718 ~ 57241553 (+)
XLOC_030533 NA non-coding downstream 403443 59605706 ~ 60222140 (+)
XLOC_030534 NA non-coding downstream 432672 59634935 ~ 59635180 (+)
XLOC_030535 CR854831.1 non-coding downstream 552881 59755144 ~ 59755261 (+)
XLOC_030536 NA non-coding downstream 1023310 60225573 ~ 60226473 (+)

Expression

Expression of XLOC_030525 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Expression of XLOC_030525 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_03157245_03158887 NA coding CI01000059 null 3157245 ~ 3159364 (+)