G1145110 (LOC106589620)


Basic Information

Item Value
gene id G1145110
gene name LOC106589620
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13357074 ~ 13360808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1306128
CTCGTAAGTGAACACATTTATTGAATTAACTTACATTTTACTTAGAAATGAGAAACAACTCAATCATGCAGagtcaaataaatgtattaaaatgagCAAATTATACAAATAAAACCTTTGAGAAAAGTTTAAAGCACTCAATTACCAAAGTGATATAAAAAGTATGAAGTTATGAATTATATTAATATGAAAAGCcttgcaaataaatacatttattcaATTGGAAATGATACAAAATGGATCTGCTTGGTGTATTTTCAATGTGGTTCAGTTGACGTGATCTGTCTCCATGAAATTAAGAAACTAGTAACTTTTACCACATGAAAAGTTGATATCTTAATCAAATCTTAACCTTAATTCAAGAAACATCTTAGccttaataaaaaataatatctTTAGATAATTTACAGGAAATATTAAGATCCATAAATATAGTGTTGGATTTTGGAAACAACCCATATTTGTATGAAGTTCCTTATACAATGTTTCAGCCAGAATGACACTCCCcagtgacactgtctgtctgctcaaaccctacaccccaacccgagtacTCTGTTCtgtcacctctggtctcttgcccctccctaccttcaggctctgctcaaaccctacaccccaacccgagtacTCTGTTCtgtcacctctggtctcttgcccctccctaccttcaggctctgctcaaaccctacaccccaacttTAGCTGTTTATAGTGTGTGGACaacgtgtgtgtgtccactgtatGTCTTTGAGTAGTCTCCTCTTCATCCATGATAACCCTACTCTGCCTAGTAGTTGCGTGTGCACCGTGTGTGTGTTGATTAGATTAGTGtgcgagtgagagaaagagagatagagagagagcgagagagagagagagagagagagagagataggagatgagagagagaaagagagagagagaaagagaggagatgagagagagagagagagagagagagagagcgagagagagagagagagataggagatgagagagagagagagagagagagagagagagagaatgagaaccagaatgagagtgtgtgtatacagGTGCACACATATTAGTGTGTATGTTCTCACACAGCCCCAGTCATACCcatcctccactcctctcatcaTGTGTGTCTCTTCATGTGCAGGGCCAGGTGGTCTGAGCGGGAGAAGGCTCTCTGACACTGCAGACACGCGTAGGGTTTCTGACCCGTGTGTTTACGGTAGTGACGGGTCAACTCGTCCGAACGGGCAAACTTCCACCCACAGCCCTCCCACGTACAGTGGTATGGTTTCTCCCCTAGGGAATCtgtgtgtgtgcggAGGTGAGCCTTGAGGTGGGAGCTCTTGGTATAGGTCTTATTACAACCTGAGTATTCACAGCTGTGTAGAGCAGCTCTCTTCTTCGCCACAGTCCTGCGGCCATTCTTCCCCTCCAAGCCACCAGGAGGAACCCCTGAGGAGGTGATAGCTAGGTGGGGCTGCTGGTGCTGGGAGTAGGGGAAGTGGTTGGAGGAGGCttgttggtggtggtggccaTGGAGGTTGTAGTCCCTCTGGTTGCGGTATAGACCCAGGTGGTGGGGGTATTTTTGGAGGAAGCTGTAGTGGTGGGTTCGAAATTCAGAGGTCATAGAAGTTGTCATGGAGACAGGGGCTTGGAGGAATCTGCCATCTTGAAACGTCACCATGGAAGTGTGTTGTTGGGGGTAGTAGTGTCCCATTCCAAAGTCCCATGATTTGGCCTTAGTGAGGACAGCAGTGGCTCTATCTCTGCCATGTCCCTCCTGGTTGCCTCCGGGGTTGAAACCATACTGGTCCACGTTCGGTTGAATGGggaatgatgataatgatgatgatgagcgAACCTGTTGGTTGTAAAGTTCTGGTATGCCTGAACCAATGGTCTCCAAGGGGGTGAGCAGCTCAACCATCAGGCTACTGCTGCCCGTATGAAGCCTGTCTGGACTTATTTGGTCCGTCAACATCCCTCCTCCATCATGGTAGAGTCCAGTTTGGTCCGGTTGAAGAAGACGCTGAGTGTTGTAGTCCAGAGAGGGGTTCAGCTCAGGTGATGGGCTGCTCCAGTCAGACAACAAGAACTCCATGTCCCATGAGGTTTCACTTTCATCGTCCAGGTGAGGAAGAACTGGCTGCTGGTCACTGGTGTTGCCAGGTGATGTCCTCTTGGTTTGAGAGTCCAGACTGAGAGCGCCATCCTCAAATTTCCACTCCTTGTGTGACAGTACAAAAAC

Function

NR:

description
PREDICTED: Krueppel-like factor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1306128 True 2257 TUCP 0.46 2 13357074 13360808

Neighbor

gene id symbol gene type direction distance location
LOC110487278 LOC106589852 coding downstream 10707 13331515 ~ 13346367 (-)
LOC118938212 LOC106589906 coding downstream 94758 13210870 ~ 13262316 (-)
LOC110487513 LOC106589682 coding downstream 171090 13179595 ~ 13185984 (-)
LOC110485655 rab3d coding downstream 178114 13163816 ~ 13178960 (-)
LOC110485650 LOC106589714 coding downstream 195906 13154136 ~ 13161168 (-)
LOC110485678 LOC106589534 coding upstream 78890 13439698 ~ 13458698 (-)
LOC110485679 LOC106564573 coding upstream 102181 13462989 ~ 13470981 (-)
LOC110485677 LOC106564572 coding upstream 110416 13471224 ~ 13494372 (-)
LOC118938214 NA coding upstream 144917 13505725 ~ 13509915 (-)
LOC110485686 LOC106589400 coding upstream 158536 13519344 ~ 13524700 (-)
G1145153 NA non-coding downstream 3003 13353848 ~ 13354071 (-)
G1145152 NA non-coding downstream 5057 13351497 ~ 13352017 (-)
G1145147 NA non-coding downstream 24398 13332463 ~ 13332676 (-)
G1145143 NA non-coding downstream 33018 13323785 ~ 13324056 (-)
G1145142 NA non-coding downstream 33334 13321408 ~ 13323740 (-)
G1145155 NA non-coding upstream 4609 13365417 ~ 13365699 (-)
G1145158 NA non-coding upstream 12128 13372936 ~ 13373216 (-)
G1145161 NA non-coding upstream 14289 13375097 ~ 13375336 (-)
G1145164 NA non-coding upstream 19106 13379914 ~ 13380117 (-)
G1145046 LOC106589870 other downstream 62931 13292935 ~ 13294143 (-)
G1145035 NA other downstream 230476 13124870 ~ 13126598 (-)
G1144338 NA other downstream 738916 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 741515 12614976 ~ 12615559 (-)
LOC110485696 LOC106564559 other upstream 302372 13657453 ~ 13665295 (-)
LOC110485704 NA other upstream 442758 13798679 ~ 13812239 (-)
G1145789 LOC106588930 other upstream 726144 14086952 ~ 14087567 (-)
G1145790 NA other upstream 728850 14089658 ~ 14090787 (-)
G1145830 LOC103354157 other upstream 816439 14177247 ~ 14180330 (-)

Expression


Co-expression Network