G1145830 (LOC103354157)


Basic Information

Item Value
gene id G1145830
gene name LOC103354157
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 14177247 ~ 14180330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1307002
aggaagagagatacagcAGGATCTCAGTAGGATCAACCCAACTCCGGAGAACTGTTCACTACAGACTGCAAAGACAGAAATGTCAGACGTTGCAACTGCCGCTGAAAAGAAGGCCCCCCCTAAATTCAAGCAGAGGACTACCCGTACCTTCAAGAGCAAGGCCCCCAAGCCTGGCCAGAAGGGaTTCGGTGACGACATCCCCGGTATGGAGGGTCTCGGCACAGACATCACAGTGGTCTGCCCATGGGAAGCTTTCGGTGACATGGAACTCAGTGACCTGGCGAAATATGGAATTGTTTAGACGCCctacccctccttccctcccctcgaCCACCCCCTCCActtctctttccttcactccccctctcctcctcctttctggACCCTGAGGTCAGGGAGTCCAGTACTCTGAACTGATTCTTGTTGTTTAGTTATGCCATCTTGTACAAGGCgcttccactttgacatcagcTCGTTGTTTAAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGCGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACCACCGACCCTGAGATCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACCACCGACCCTGAGAGCCGGGCGTACTCGGTGCACCACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGAAATGGTgaagtcacacaaacacacagtgatacTTGGGAAATATGCACACACCAGCTTTAAACTGAAGACACATATGACCAAACCTCATCCTGCCACTGTCCTCCTGTAGAAATCTCACGTAAAGGACCAGCTAAGCAAAGTCCTAACAACTGAAGTCAAATGGCACTCAAGTTATATGAATAAGACATGTAATGTATAATAGCGATGTGCATTCGCTTTCTGCGGTCTGGTAGGTAAATAAACAGTCATGTCAGTGAAGCTTACTTCACTTCGACACTACTACTACAGTTTGACTGGTGCACTTCCTGAGAGAAGCTGGACTAAATTTTCAATGTTATTAAAAGAGGGTTTGATTAACCGTTGTTTATATCTCAACCATAGTTGGTCTCCTCCCGCCTGACTTTTTTCTCAACCTGCACCCGCTCTCTTTGAAAGCACTTTttatatacagaaatatatatttatgtacaaaataaaatcAATCCATCTTTTTTTA
>TU1307003
aggaagagagatacagcAGGATCTCAGTAGGATCAACCCAACTCCGGAGAACTGTTCACTACAGACTGCAAAGACAGAAATGTCAGACGTTGCAACTGCCGCTGAAAAGAAGGCCCCCCCTAAATTCAAGCAGAGGACTACCCGTACCTTCAAGAGCAAGGCCCCCAAGCCTGGCCAGAAGGGaTTCGGTGACGACATCCCCGGTATGGAGGGTCTCGGCACAGACATCACAGTGGTCTGCCCATGGGAAGCTTTCGGTGACATGGAACTCAGTGACCTGGCGAAATATGGAATTGTTTAGACGCCctacccctccttccctcccctcgaCCACCCCCTCCActtctctttccttcactccccctctcctcctcctttctggACCCTGAGGTCAGGGAGTCCAGTACTCTGAACTGATTCTTGTTGTTTAGTTATGCCATCTTGTACAAGGCgcttccactttgacatcagcTCGTTGTTTAAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGCGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACCACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACCACCGACCCTGAGAGCCGGGCGTACTCGGTGCACCACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGCCGGGCGTACTCGGGTGCACTACCGACCCTGAGAGAAATGGTgaagtcacacaaacacacagtgatacTTGGGAAATATGCACACACCAGCTTTAAACTGAAGACACATATGACCAAACCTCATCCTGCCACTGTCCTCCTGTAGAAATCTCACGTAAAGGACCAGCTAAGCAAAGTCCTAACAACTGAAGTCAAATGGCACTCAAGTTATATGAATAAGACATGTAATGTATAATAGCGATGTGCATTCGCTTTCTGCGGTCTGGTAGGTAAATAAACAGTCATGTCAGTGAAGCTTACTTCACTTCGACACTACTACTACAGTTTGACTGGTGCACTTCCTGAGAGAAGCTGGACTAAATTTTCAATGTTATTAAAAGAGGGTTTGATTAACCGTTGTTTATATCTCAACCATAGTTGGTCTCCTCCCGCCTGACTTTTTTCTCAACCTGCACCCGCTCTCTTTGAAAGCACTTTttatatacagaaatatatatttatgtacaaaataaaatcAATCCATCTTTTTTTA

Function

NR:

description
retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1307002 False 1402 lncRNA 0.52 3 14177247 14180330
TU1307003 True 1332 TUCP 0.52 4 14177247 14180330

Neighbor

gene id symbol gene type direction distance location
LOC110485713 LOC106588978 coding downstream 60659 14112526 ~ 14116588 (-)
LOC110485709 NA coding downstream 280516 13895588 ~ 13896731 (-)
LOC110485704 NA coding downstream 365178 13798679 ~ 13812239 (-)
smdt1b NA coding downstream 394117 13781575 ~ 13783130 (-)
LOC110485689 LOC106564549 coding downstream 414999 13753096 ~ 13762248 (-)
LOC118936523 NA coding upstream 62273 14242603 ~ 14244662 (-)
LOC118938216 NA coding upstream 75150 14255480 ~ 14275408 (-)
LOC118938215 NA coding upstream 77203 14257533 ~ 14258326 (-)
LOC110485718 NA coding upstream 85350 14265680 ~ 14269377 (-)
LOC110485726 LOC106564611 coding upstream 159323 14339653 ~ 14361981 (-)
G1145807 LOC106589218 non-coding downstream 8036 14167048 ~ 14169211 (-)
G1145801 NA non-coding downstream 58803 14118123 ~ 14118444 (-)
G1145797 NA non-coding downstream 71386 14105064 ~ 14105861 (-)
G1145792 NA non-coding downstream 81853 14090947 ~ 14095394 (-)
G1145788 NA non-coding downstream 87869 14088689 ~ 14089378 (-)
G1145843 NA non-coding upstream 21543 14201873 ~ 14210625 (-)
G1145881 NA non-coding upstream 96628 14276958 ~ 14277181 (-)
G1145889 NA non-coding upstream 115981 14296311 ~ 14297616 (-)
G1145890 LOC106588948 non-coding upstream 118067 14298397 ~ 14298832 (-)
G1145875 NA non-coding upstream 123428 14303758 ~ 14305639 (-)
G1145790 NA other downstream 86460 14089658 ~ 14090787 (-)
G1145789 LOC106588930 other downstream 89680 14086952 ~ 14087567 (-)
LOC110485696 LOC106564559 other downstream 513627 13657453 ~ 13665295 (-)
G1145110 LOC106589620 other downstream 816439 13357074 ~ 13360808 (-)
G1146251 NA other upstream 530252 14710582 ~ 14711954 (-)
G1146446 NA other upstream 616336 14796666 ~ 14797272 (-)
G1146485 NA other upstream 742280 14922610 ~ 14925617 (-)
LOC110485744 LOC106588598 other upstream 1201830 15376146 ~ 15383913 (-)
LOC110485748 pdcd11 other upstream 1254771 15432063 ~ 15454831 (-)

Expression

G1145830(LOC103354157) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
End of interactive chart.

G1145830(LOC103354157) Expression in each Bioproject

Bar chart with 17 bars.
G1145830(LOC103354157) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network