Gene
RNA
| Item | Value |
|---|---|
| gene id | G1152267 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 19973652 ~ 19989274 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LINE-1 reverse transcriptase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1314112 | True | 868 | lncRNA | 0.42 | 2 | 19973652 | 19989274 |
19,956,000
19,958,000
19,960,000
19,962,000
19,964,000
19,966,000
19,968,000
19,970,000
19,972,000
19,974,000
19,976,000
19,978,000
19,980,000
19,982,000
19,984,000
19,986,000
19,988,000
19,990,000
NC_048577.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110485853 | LOC106564724 | coding | downstream | 22065 | 19891752 ~ 19951587 (-) |
| LOC110485104 | LOC106587435 | coding | downstream | 82254 | 19872030 ~ 19891398 (-) |
| LOC110485850 | LOC106587400 | coding | downstream | 126919 | 19839590 ~ 19846733 (-) |
| LOC118938229 | LOC104959036 | coding | downstream | 272072 | 19697097 ~ 19701580 (-) |
| LOC118938226 | LOC105028355 | coding | downstream | 293405 | 19677056 ~ 19680247 (-) |
| LOC118938546 | NA | coding | upstream | 98099 | 20087373 ~ 20088947 (-) |
| LOC110485859 | LOC106587453 | coding | upstream | 121769 | 20111043 ~ 20120903 (-) |
| LOC100136217 | LOC100136217 | coding | upstream | 133368 | 20122642 ~ 20131526 (-) |
| LOC110485861 | LOC106587481 | coding | upstream | 144823 | 20134097 ~ 20137740 (-) |
| LOC110485865 | LOC106587502 | coding | upstream | 176985 | 20166259 ~ 20170031 (-) |
| G1152160 | NA | non-coding | downstream | 20346 | 19953089 ~ 19953306 (-) |
| G1152072 | LOC106587409 | non-coding | downstream | 104882 | 19798859 ~ 19868770 (-) |
| G1152088 | LOC106564722 | non-coding | downstream | 147528 | 19793424 ~ 19826124 (-) |
| G1152098 | NA | non-coding | downstream | 148152 | 19809239 ~ 19825500 (-) |
| G1152086 | NA | non-coding | downstream | 183589 | 19789752 ~ 19790063 (-) |
| G1152277 | NA | non-coding | upstream | 163 | 19989437 ~ 20062277 (-) |
| G1152272 | NA | non-coding | upstream | 63768 | 20053042 ~ 20072512 (-) |
| G1152326 | NA | non-coding | upstream | 132506 | 20121780 ~ 20121993 (-) |
| G1152327 | NA | non-coding | upstream | 132765 | 20122039 ~ 20122258 (-) |
| G1152308 | LOC106587472 | non-coding | upstream | 148552 | 20137826 ~ 20138797 (-) |
| G1151940 | LOC108272819 | other | downstream | 316767 | 19655774 ~ 19656885 (-) |
| LOC110485829 | NA | other | downstream | 582269 | 19388990 ~ 19392179 (-) |
| LOC110485827 | LOC106564656 | other | downstream | 587251 | 19379408 ~ 19387327 (-) |
| LOC110485824 | LOC106564658 | other | downstream | 640669 | 19277856 ~ 19332983 (-) |
| G1151820 | NA | other | downstream | 730578 | 19242845 ~ 19243074 (-) |
| G1152298 | NA | other | upstream | 163159 | 20152433 ~ 20156750 (-) |
| G1152720 | NA | other | upstream | 514236 | 20503510 ~ 20503766 (-) |
| krt98 | LOC106587813 | other | upstream | 627947 | 20617221 ~ 20718484 (-) |
| G1152751 | LOC106587793 | other | upstream | 634004 | 20623278 ~ 20657642 (-) |
| G1152754 | LOC107090753 | other | upstream | 667198 | 20656472 ~ 20675752 (-) |
