G1153612



Basic Information


Item Value
gene id G1153612
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 21582972 ~ 21592526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1315661
ACCTTCTTGATACTGCTGGCGTACTGCTTCATGGCTATCTTCTCCACCGTGCTCTCGAAGCCGAAGAACGACTTAATGTCCAGGCTGGCCGACTGCTCGAAACACGTCCAGTCCTCATTCTCAGGGTGGGCCTGCGCACACGAAAGAGAAGATACAAGTGTTACCGTGGCAACCACACACGGCAATTTGACTCTGTGCCGAGCGCTGACGCACACTACAAGCCACACATCCTCAGCTGTGTGTGGGAGTGCGTACCGATGACACTACCCACTGGCATTATACCAATACTGACAGGTTGTGCCGTTATATGCCAACATATATTGACAGTAGGGGGGGATTTTGTGACGGTATCAAGCACAGAAAACACATTCACACAGCCTGAGATTGtatcaaaatagattttgtcAGATGTCAatgagtggagtgtgttagataggactgggagtgtgttcgataggactgggagtgtcagatgtcagtgagtggagtgtgttagataggactgggagtgtcagatgtcagtgagtggagcgtgttagataggactgggagtgtcagatgtcagtgagtggagtgtgttagataggactgggagtgtgttagataggactggaagtgtcagatgtcagtgagtggagcgtgttagataggactgacagtgtcagatgtcagtgagttcagtgagtggagtgtgttagataggactgggagtgtgttagataggactgacagtgtcagatgtcagtgagtggagtgtgttagataggactgggagtgtcagatgtcagtgagtggagtgtgttagataggactggcagtgtcagatgtcagtgagtggagtgtgttagataggactgggagtgtcagatgtcagtaagtggagtgtgttagataggactgggagtgtgttagataggactggcagtgtcagatgtcagtgagtggagtgtgttagataggactggcagtgtcagatgtcagtgagtgtagtgtgttagataggactgggagtgtcagcCTTGTTAGCCTTGTTAGCACCCGCAGGCTAACTGTAACTGTTCTTCACAAAGCTGCATAGTGGACCTAAAATAGGCCCGCTAGCCTCGTTAGACGCTAATGCAATGTGCTTGACCTCATTAACTCAGAGCGCATTCACTCACCACGGGAGCCTGGTGAGAGTAGCACTGAGGTCAGAGGAGGGAGTGGAGCAACACACCGCAGTAGGCCTGGGAGGTGTGAAAGAACTGACTCCAgaacagtgtgtgagtgtgttgaggCGGAGTGCTGCCGGTAACAATGGGAGGTCTGAATTATTCAGTGGGAAGGAAGCAGCATATGAGAGGCTGGTTGGAACACAGCTTTCTCTGTCTATTTGGAGAGAAGCATTGTGAGTGCATTGGAGGGAAGGGGTTCAGACATAAGTGTGCTGTCAACAACTTGCttttacagggctgtgtgtaagTGTCGTGTGAGATAAGGCGATAGAAAACTTGACGTGTGTGTACTGTAGCTACATATCAGGAGCTGGTTAGAACGCCGCTTGATCCGTCCATTTGAAGAGAAATTGTGAATGCATAGGTGTGCTGTCGACAGCTGGCTTCAAAGTGGTTTAacagggctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgcgcgtgtgtgtgcacgcgtttGACAAATTAAAGCCAAGGCTTGAATGCGTGTTAGCGAATGGACAGGTAGCTTATGTAACCATTCTAACCAAAGCTAcaatttaatgtgtgtgtgtatggcaagtgtgtgtgtatgcgcgcgtgtgtgtgtgtgtgtgtgtgtaacacaccGAGTAGCTGCAGAGTTCGTGGATGATGACTCTGTTGGAGAAGGTCTCGTTGTGGGACTCGATGTGGAGcgtcctctctctcttgttcagaGTGTTCTCCTGGCTGAAGTACACATAGTCCACCCCCGCAATCTGCACACAAAAGGACACTGATGAAACCAGTTGCAGCAAAACTAAATGGTCAAAAAGGAAAAACGGATACACCGATTACAAAATGGCCGATGCCTGATTTGA

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1315661 True 2061 lncRNA 0.49 7 21582972 21592526

Neighbor


gene id symbol gene type direction distance location
LOC118938483 NA coding upstream 20975 21560819 ~ 21561997 (+)
LOC110485938 LOC106564925 coding upstream 93777 21484377 ~ 21489195 (+)
LOC110485937 NA coding upstream 116993 21465211 ~ 21465979 (+)
LOC110485931 LOC106564932 coding upstream 368357 21208787 ~ 21214615 (+)
LOC110485928 pp12c coding upstream 397792 21173895 ~ 21185180 (+)
LOC110485944 LOC106588224 coding downstream 375620 21968146 ~ 21974128 (+)
LOC110485943 LOC106588557 coding downstream 419485 22012011 ~ 22021092 (+)
LOC110485945 LOC105021619 coding downstream 448162 22040688 ~ 22042468 (+)
LOC101268942 NA coding downstream 498447 22090973 ~ 22091293 (+)
LOC110485949 NA coding downstream 501434 22093904 ~ 22102095 (+)
G1153608 NA non-coding upstream 8130 21571838 ~ 21574842 (+)
G1153599 NA non-coding upstream 73627 21509138 ~ 21509345 (+)
G1153597 NA non-coding upstream 74379 21508335 ~ 21508593 (+)
G1153584 NA non-coding upstream 83142 21499547 ~ 21499830 (+)
G1153575 NA non-coding upstream 90001 21492769 ~ 21492971 (+)
G1153670 NA non-coding downstream 51295 21643821 ~ 21649648 (+)
G1153672 NA non-coding downstream 52387 21644913 ~ 21650154 (+)
G1153702 NA non-coding downstream 118708 21711234 ~ 21775704 (+)
G1153730 NA non-coding downstream 175020 21767546 ~ 21768239 (+)
G1153777 NA non-coding downstream 266354 21858880 ~ 21859216 (+)
G1152985 LOC106588089 other upstream 426094 21155494 ~ 21156878 (+)
LOC110485920 LOC106588056 other upstream 522172 21057745 ~ 21068780 (+)
LOC110485904 LOC106564952 other upstream 703435 20860370 ~ 20880503 (+)
LOC110485890 LOC106587723 other upstream 1127987 20442132 ~ 20455056 (+)
G1153651 LOC106576875 other downstream 14966 21607492 ~ 21608829 (+)
G1154234 NA other downstream 566045 22158571 ~ 22159429 (+)
G1154335 NA other downstream 847110 22439636 ~ 22456349 (+)
G1154412 mcoln1 other downstream 918853 22511379 ~ 22511740 (+)
c13h17orf67 LOC106564992 other downstream 1013782 22606256 ~ 22610371 (+)

Expression



Co-expression Network