G1154276 (LOC106588346)


Basic Information

Item Value
gene id G1154276
gene name LOC106588346
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22315106 ~ 22319544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1316413
ACCACCACAACTTCAATTGAATTGTTTTATTTGAAGGCCCATGCATGACCCCCAGGTAAGATCTTAACATATCACTTTAAAACATACCACTAACTCAAAATCTGCATTACTTAGTAAAAATAAATTACTGAGGAATGTAACAAATAAAAACAGTCAAGGAGAGGTGCACCAGTTAAAGATGCACTTCAACAGCCCCCATTGGGACTCATTTCAATGCTTGGGGTTACTGAAGAATTCCAACCCTGCTGTAagcaaaaaaaaagttaaacagtACAAAGGATAATAATATTCATATAAGATTTAAAAGACAAGAGGGGAAAAAGGGTGGTTTCGTTGTGAATTGTGCGCACAATCTACACCTAGTCAGTTACTGTGGGAAAGGAGGAGGCATAGAGTAGGGTACCATGGGTGGGGGTTGTTGGGGCTGCTGTGCCTGTGGGTTAAAGGGAAACGGTGGGCGACCCATGCCGTTTTGGGTGGCCGCCTGTGCGGCTCCAAACTGTGGAGGGGCCTGGAAGTTCTGGCCACCGAATGCACCCACCTGATTGGTGGTGCCGAAGCTAGCCTGTCCGTTGCTGCTGTAGCTGTTGCCGTAGCTACCGCCAGAGCTAGCGCCCTTGTTATAGGTGCTACCCCCGTAGCCCCCTCCGTTTTGGGTTTTTGCGCCAAAGGCACTCTTTGGTCCCCCACCGAACCCCCTGTCGCTATCCTTGTCCctgtaaccaccaccaccaccaccaccaccgtaaCTCCTTCCCCCAGAATACCTATCTCGTCGGTCATCCCTAAAGCCACCTCTTCCCCCCCCTCCACGACctggaaaacaagacaaaagaGACAGGCTATGAGATCACTGGCCTGTTTCATGTTGTTGGGGGTGAAGAAGGTGTAGGCGGTGCCCGTTTTTTGACTGCGGGCCGTGCGTCCAATGCGGTGGATATAGTCCTCAGAGGAGTTAGGATAGTCATAATTTATGACAAATTTCACATCCTCCACATCTAGACCGCGGGAGGCCACGTCGGTGGCGATGAGGATGGGGGCCTTGCCG
>TU1316414
ACCACCACAACTTCAATTGAATTGTTTTATTTGAAGGCCCATGCATGACCCCCAGGTAAGATCTTAACATATCACTTTAAAACATACCACTAACTCAAAATCTGCATTACTTAGTAAAAATAAATTACTGAGGAATGTAACAAATAAAAACAGTCAAGGAGAGGTGCACCAGTTAAAGATGCACTTCAACAGCCCCCATTGGGACTCATTTCAATGCTTGGGGTTACTGAAGAATTCCAACCCTGCTGTAagcaaaaaaaaagttaaacagtACAAAGGATAATAATATTCATATAAGATTTAAAAGACAAGAGGGGAAAAAGGGTGGTTTCGTTGTGAATTGTGCGCACAATCTACACCTAGTCAGTTACTGTGGGAAAGGAGGAGGCATAGAGTAGGGTACCATGGGTGGGGGTTGTTGGGGCTGCTGTGCCTGTGGGTTAAAGGGAAACGGTGGGCGACCCATGCCGTTTTGGGTGGCCGCCTGTGCGGCTCCAAACTGTGGAGGGGCCTGGAAGTTCTGGCCACCGAATGCACCCACCTGATTGGTGGTGCCGAAGCTAGCCTGTCCGTTGCTGCTGTAGCTGTTGCCGTAGCTACCGCCAGAGCTAGCGCCCTTGTTATAGGTGCTACCCCCGTAGCCCCCTCCGTTTTGGGTTTTTGCGCCAAAGGCACTCTTTGGTCCCCCACCGAACCCCCTGTCGCTATCCTTGTCCctgtaaccaccaccaccaccaccaccaccgtaaCTCCTTCCCCCAGAATACCTATCTCGTCGGTCATCCCTAAAGCCACCTCTTCCCCCCCCTCCACGACctggaaaacaagacaaaagaGACAGGTCTAATGGATGATCCTACAGGAAAAccgaatcaaattttatt
>TU1316410
TCTGGCCTCCGCCATCTGGAGAAGCTTGGGGTTGATAGCCTGGTTAGCTTCGCGGAGCACAGCTATGAGATCACTGGCCTGTTTCATGTTGTTGGGGGTGAAGAAGGTGTAGGCGGTGCCCGTTTTTTGACTGCGGGCCGTGCGTCCAATGCGGTGGATATAGTCCTCAGAGGAGTTAGGATAGTCATAATTTATGACAAATTTCACATCCTCCACATCTAGACCGCGGGAGGCCACGTCGGTGGCGATGAGGATGGGGGCCTTGCCG

Function

NR:

description
probable ATP-dependent RNA helicase DDX5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1316413 False 1048 lncRNA 0.50 3 22315106 22317915
TU1316414 False 884 lncRNA 0.48 2 22315106 22319544
TU1316410 True 268 lncRNA 0.55 2 22316161 22317915

Neighbor

gene id symbol gene type direction distance location
LOC110485954 ten1 coding upstream 41760 22270081 ~ 22273346 (+)
aanat1 aanat coding upstream 115317 22196238 ~ 22199789 (+)
LOC110485951 LOC106588251 coding upstream 161273 22124284 ~ 22153833 (+)
LOC110485949 NA coding upstream 213026 22093904 ~ 22102095 (+)
LOC101268942 NA coding upstream 223813 22090973 ~ 22091293 (+)
LOC110485957 LOC106588316 coding downstream 4216 22323760 ~ 22340876 (+)
LOC110485959 LOC106588356 coding downstream 113894 22433438 ~ 22440891 (+)
LOC110485960 LOC106564900 coding downstream 128626 22448170 ~ 22451551 (+)
LOC118938241 NA coding downstream 134229 22453773 ~ 22457004 (+)
LOC110485110 LOC106564993 coding downstream 214506 22534050 ~ 22542246 (+)
G1154294 NA non-coding upstream 508 22314161 ~ 22314598 (+)
G1154278 NA non-coding upstream 63046 22244934 ~ 22252060 (+)
G1154217 NA non-coding upstream 77347 22122455 ~ 22237759 (+)
G1154263 NA non-coding upstream 98234 22216358 ~ 22216872 (+)
G1154300 NA non-coding downstream 3562 22323106 ~ 22323523 (+)
G1154306 NA non-coding downstream 24992 22344536 ~ 22347208 (+)
G1154337 NA non-coding downstream 140195 22459739 ~ 22462152 (+)
G1154338 LOC106588372 non-coding downstream 142719 22462263 ~ 22463777 (+)
G1154408 NA non-coding downstream 183203 22502747 ~ 22503029 (+)
G1154234 NA other upstream 155677 22158571 ~ 22159429 (+)
G1153651 LOC106576875 other upstream 706277 21607492 ~ 21608829 (+)
LOC110485931 LOC106564932 other upstream 1100494 21208787 ~ 21214615 (+)
G1152985 LOC106588089 other upstream 1158228 21155494 ~ 21156878 (+)
LOC110485920 LOC106588056 other upstream 1254306 21057745 ~ 21068780 (+)
G1154335 NA other downstream 120092 22439636 ~ 22456349 (+)
G1154412 mcoln1 other downstream 191835 22511379 ~ 22511740 (+)
c13h17orf67 LOC106564992 other downstream 286764 22606256 ~ 22610371 (+)
G1155006 LOC100136012 other downstream 639388 22958932 ~ 22959351 (+)
pitpnc1a LOC106585713 other downstream 1192382 23511706 ~ 23591433 (+)

Expression


Co-expression Network