Gene
RNA
| Item | Value |
|---|---|
| gene id | G1154338 |
| gene name | LOC106588372 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 22462263 ~ 22463777 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| nascent polypeptide-associated complex subunit alpha, muscle-specific form-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1316485 | True | 1515 | lncRNA | 0.55 | 1 | 22462263 | 22463777 |
22,458,400
22,458,800
22,459,200
22,459,600
22,460,000
22,460,400
22,460,800
22,461,200
22,461,600
22,462,000
22,462,400
22,462,800
22,463,200
22,463,600
22,464,000
22,464,400
22,464,800
22,465,200
NC_048577.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118938241 | NA | coding | upstream | 5259 | 22453773 ~ 22457004 (+) |
| LOC110485960 | LOC106564900 | coding | upstream | 10712 | 22448170 ~ 22451551 (+) |
| LOC110485959 | LOC106588356 | coding | upstream | 21372 | 22433438 ~ 22440891 (+) |
| LOC110485957 | LOC106588316 | coding | upstream | 121387 | 22323760 ~ 22340876 (+) |
| LOC110485954 | ten1 | coding | upstream | 188917 | 22270081 ~ 22273346 (+) |
| LOC110485110 | LOC106564993 | coding | downstream | 70273 | 22534050 ~ 22542246 (+) |
| LOC110485964 | LOC106588395 | coding | downstream | 90885 | 22554662 ~ 22568808 (+) |
| trim25 | LOC106564896 | coding | downstream | 116960 | 22580737 ~ 22596273 (+) |
| c13h17orf67 | LOC106564992 | coding | downstream | 142479 | 22606256 ~ 22610371 (+) |
| LOC110485978 | LOC106564882 | coding | downstream | 616886 | 23080663 ~ 23325301 (+) |
| G1154337 | NA | non-coding | upstream | 111 | 22459739 ~ 22462152 (+) |
| G1154306 | NA | non-coding | upstream | 115055 | 22344536 ~ 22347208 (+) |
| G1154300 | NA | non-coding | upstream | 138740 | 22323106 ~ 22323523 (+) |
| G1154276 | LOC106588346 | non-coding | upstream | 142719 | 22315106 ~ 22319544 (+) |
| G1154294 | NA | non-coding | upstream | 147665 | 22314161 ~ 22314598 (+) |
| G1154408 | NA | non-coding | downstream | 38970 | 22502747 ~ 22503029 (+) |
| G1154410 | NA | non-coding | downstream | 40738 | 22504515 ~ 22510295 (+) |
| G1154415 | NA | non-coding | downstream | 47318 | 22511095 ~ 22511316 (+) |
| G1154416 | NA | non-coding | downstream | 51634 | 22515411 ~ 22516071 (+) |
| G1154421 | NA | non-coding | downstream | 56995 | 22520772 ~ 22521249 (+) |
| G1154335 | NA | other | upstream | 5914 | 22439636 ~ 22456349 (+) |
| G1154234 | NA | other | upstream | 302834 | 22158571 ~ 22159429 (+) |
| G1153651 | LOC106576875 | other | upstream | 853434 | 21607492 ~ 21608829 (+) |
| LOC110485931 | LOC106564932 | other | upstream | 1247651 | 21208787 ~ 21214615 (+) |
| G1152985 | LOC106588089 | other | upstream | 1305385 | 21155494 ~ 21156878 (+) |
| G1154412 | mcoln1 | other | downstream | 47602 | 22511379 ~ 22511740 (+) |
| G1155006 | LOC100136012 | other | downstream | 495155 | 22958932 ~ 22959351 (+) |
| pitpnc1a | LOC106585713 | other | downstream | 1048149 | 23511706 ~ 23591433 (+) |
| LOC110485992 | LOC106585723 | other | downstream | 1132141 | 23595876 ~ 23608606 (+) |
