G1154912


Basic Information

Item Value
gene id G1154912
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 22793549 ~ 22796328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1317130
ccctctcaatcagccccacgacgtagtcacctggaatgcatttcaatgaatgagtgccttgttaaaagttaatttgtggaatttctagccttcttaatgcgtttgagccaagcagttgtgttgtgacaaggcaggggtggtatacagaacctACTTGGTAAAATaacaggtcaaataagcaaagagaatagACAGTCCATCATAacgttaactttttatggctgcaggggcagtatcgagtagtttggatgaaaaggtgcccactGTAAACGGctagctcctcagtctcagttgctaatatatgcatattattactagtattggatagaaaacactaaagtttccaaaactgtcaaaatattgtctgtgagtataacagaactgatattgcaggcaaaaccctgaggaaaatcaaagcaggaagtggcttctattttgaaaactccatgttccatagaaTCCCTTTgcaccatttaaagggatatgaaaccgattccttttcctatcgcttcctcaaggtgtcagtctttagacatagtttcatgcttttattttgaaaaatgagccagaacgataacatcgcgtcaagtggtcacatgagttttgcttgcgcaacagaatttggacagccatggttttcccctctcctactgtgaaagaaatttgcggttgatatattaatCGATTACatgttttaaaaacaacctgaggattgactataaaaaacgtttgacatgtttctgtggacataatggaaactatttggaattttcgtatgcgttgtcgtgaccgctctttcctgtgcatttctgaacataacgctccaaacaaactgaggtattttggatatacaaataatctttatggaacaaacggaacatttgttgtgtaactgggagtcttgtgagtgaaaacatccgaagatcaaaggtaaatgattaatttgattgcttttctgattttcgtgaccgagctacctgatgctaagtgtac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1317130 True 993 lncRNA 0.39 2 22793549 22796328

Neighbor

gene id symbol gene type direction distance location
c13h17orf67 LOC106564992 coding upstream 183178 22606256 ~ 22610371 (+)
trim25 LOC106564896 coding upstream 197276 22580737 ~ 22596273 (+)
LOC110485964 LOC106588395 coding upstream 224741 22554662 ~ 22568808 (+)
LOC110485110 LOC106564993 coding upstream 251303 22534050 ~ 22542246 (+)
LOC118938241 NA coding upstream 336545 22453773 ~ 22457004 (+)
LOC110485978 LOC106564882 coding downstream 284335 23080663 ~ 23325301 (+)
LOC110485983 LOC106585659 coding downstream 533906 23330234 ~ 23353922 (+)
LOC110485984 LOC106586345 coding downstream 570877 23367205 ~ 23391112 (+)
LOC110485985 LOC106585672 coding downstream 606068 23402396 ~ 23441245 (+)
pitpnc1a LOC106585713 coding downstream 715378 23511706 ~ 23591433 (+)
G1154909 LOC106588447 non-coding upstream 1247 22791472 ~ 22792302 (+)
G1154897 NA non-coding upstream 24257 22766338 ~ 22769292 (+)
G1154884 LOC100136012 non-coding upstream 41425 22751826 ~ 22752124 (+)
G1154882 NA non-coding upstream 44359 22748961 ~ 22749190 (+)
G1154864 NA non-coding upstream 62766 22727313 ~ 22730783 (+)
G1154947 NA non-coding downstream 56316 22852644 ~ 22852968 (+)
G1154951 NA non-coding downstream 61587 22857915 ~ 22858143 (+)
G1154954 NA non-coding downstream 68131 22864459 ~ 22864897 (+)
G1154968 NA non-coding downstream 105984 22902312 ~ 22902544 (+)
G1154970 NA non-coding downstream 107283 22903611 ~ 22903813 (+)
G1154412 mcoln1 other upstream 281809 22511379 ~ 22511740 (+)
G1154335 NA other upstream 337200 22439636 ~ 22456349 (+)
G1154234 NA other upstream 634120 22158571 ~ 22159429 (+)
G1153651 LOC106576875 other upstream 1184720 21607492 ~ 21608829 (+)
G1155006 LOC100136012 other downstream 162604 22958932 ~ 22959351 (+)
LOC110485992 LOC106585723 other downstream 799590 23595876 ~ 23608606 (+)
G1156089 NA other downstream 1202318 23998646 ~ 24003968 (+)
G1156247 NA other downstream 1530455 24326783 ~ 24328963 (+)

Expression


Co-expression Network